Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LCH16_RS17450 Genome accession   NZ_CP083943
Coordinates   3544092..3545477 (-) Length   461 a.a.
NCBI ID   WP_015418335.1    Uniprot ID   -
Organism   Bacillus velezensis strain CSUSB3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3539092..3550477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH16_RS17415 (LCH16_17415) flgL 3539267..3540184 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  LCH16_RS17420 (LCH16_17420) flgK 3540196..3541713 (-) 1518 WP_032869556.1 flagellar hook-associated protein FlgK -
  LCH16_RS17425 (LCH16_17425) - 3541729..3542211 (-) 483 WP_003151394.1 flagellar protein FlgN -
  LCH16_RS17430 (LCH16_17430) flgM 3542226..3542492 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LCH16_RS17435 (LCH16_17435) - 3542562..3542981 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  LCH16_RS17440 (LCH16_17440) comFC 3543055..3543744 (-) 690 WP_196493397.1 phosphoribosyltransferase family protein Machinery gene
  LCH16_RS17445 (LCH16_17445) - 3543750..3544034 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  LCH16_RS17450 (LCH16_17450) comFA 3544092..3545477 (-) 1386 WP_015418335.1 DEAD/DEAH box helicase Machinery gene
  LCH16_RS17455 (LCH16_17455) - 3545585..3546433 (-) 849 WP_015418336.1 DegV family protein -
  LCH16_RS17460 (LCH16_17460) degU 3546531..3547220 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LCH16_RS17465 (LCH16_17465) degS 3547297..3548460 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  LCH16_RS17470 (LCH16_17470) - 3548683..3549330 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52558.94 Da        Isoelectric Point: 10.1838

>NTDB_id=608704 LCH16_RS17450 WP_015418335.1 3544092..3545477(-) (comFA) [Bacillus velezensis strain CSUSB3]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWASSAKRQIT
YCRACVVMGRADELTSLYSWNQASENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=608704 LCH16_RS17450 WP_015418335.1 3544092..3545477(-) (comFA) [Bacillus velezensis strain CSUSB3]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGTCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCGTGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCTCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCCGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACCGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.826

99.783

0.627