Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LCH16_RS17440 Genome accession   NZ_CP083943
Coordinates   3543055..3543744 (-) Length   229 a.a.
NCBI ID   WP_196493397.1    Uniprot ID   -
Organism   Bacillus velezensis strain CSUSB3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3538055..3548744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH16_RS17405 (LCH16_17405) fliW 3538146..3538577 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  LCH16_RS17410 (LCH16_17410) - 3538607..3539176 (-) 570 WP_007407476.1 DUF6470 family protein -
  LCH16_RS17415 (LCH16_17415) flgL 3539267..3540184 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  LCH16_RS17420 (LCH16_17420) flgK 3540196..3541713 (-) 1518 WP_032869556.1 flagellar hook-associated protein FlgK -
  LCH16_RS17425 (LCH16_17425) - 3541729..3542211 (-) 483 WP_003151394.1 flagellar protein FlgN -
  LCH16_RS17430 (LCH16_17430) flgM 3542226..3542492 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LCH16_RS17435 (LCH16_17435) - 3542562..3542981 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  LCH16_RS17440 (LCH16_17440) comFC 3543055..3543744 (-) 690 WP_196493397.1 phosphoribosyltransferase family protein Machinery gene
  LCH16_RS17445 (LCH16_17445) - 3543750..3544034 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  LCH16_RS17450 (LCH16_17450) comFA 3544092..3545477 (-) 1386 WP_015418335.1 DEAD/DEAH box helicase Machinery gene
  LCH16_RS17455 (LCH16_17455) - 3545585..3546433 (-) 849 WP_015418336.1 DegV family protein -
  LCH16_RS17460 (LCH16_17460) degU 3546531..3547220 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LCH16_RS17465 (LCH16_17465) degS 3547297..3548460 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25245.83 Da        Isoelectric Point: 8.0779

>NTDB_id=608703 LCH16_RS17440 WP_196493397.1 3543055..3543744(-) (comFC) [Bacillus velezensis strain CSUSB3]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFSAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=608703 LCH16_RS17440 WP_196493397.1 3543055..3543744(-) (comFC) [Bacillus velezensis strain CSUSB3]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTTCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598