Detailed information    

insolico Bioinformatically predicted

Overview


Name   comP   Type   Regulator
Locus tag   LCH16_RS15450 Genome accession   NZ_CP083943
Coordinates   3152755..3155106 (-) Length   783 a.a.
NCBI ID   WP_015418104.1    Uniprot ID   -
Organism   Bacillus velezensis strain CSUSB3     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context


Location: 3147755..3160106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH16_RS15410 (LCH16_15410) - 3148215..3148646 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  LCH16_RS15415 (LCH16_15415) - 3148646..3148987 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  LCH16_RS15420 (LCH16_15420) - 3148980..3150461 (+) 1482 WP_007408671.1 Na+/H+ antiporter subunit D -
  LCH16_RS15425 (LCH16_15425) - 3150467..3150943 (+) 477 WP_224462814.1 Na+/H+ antiporter subunit E -
  LCH16_RS15430 (LCH16_15430) - 3150943..3151227 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  LCH16_RS15435 (LCH16_15435) mnhG 3151211..3151585 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  LCH16_RS15440 (LCH16_15440) - 3151625..3152008 (-) 384 WP_061860832.1 hotdog fold thioesterase -
  LCH16_RS15445 (LCH16_15445) comA 3152030..3152674 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  LCH16_RS15450 (LCH16_15450) comP 3152755..3155106 (-) 2352 WP_015418104.1 sensor histidine kinase Regulator
  LCH16_RS15455 (LCH16_15455) comX 3155084..3155254 (-) 171 WP_015418105.1 competence pheromone ComX -
  LCH16_RS15460 (LCH16_15460) - 3155251..3156180 (-) 930 WP_224462816.1 polyprenyl synthetase family protein -
  LCH16_RS15465 (LCH16_15465) degQ 3156311..3156451 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  LCH16_RS15470 (LCH16_15470) - 3156917..3157258 (+) 342 WP_015418107.1 hypothetical protein -
  LCH16_RS15475 (LCH16_15475) - 3157265..3158488 (-) 1224 WP_015418108.1 EAL and HDOD domain-containing protein -
  LCH16_RS15480 (LCH16_15480) - 3158618..3160084 (-) 1467 WP_015418109.1 nicotinate phosphoribosyltransferase -

Sequence


Protein


Download         Length: 783 a.a.        Molecular weight: 90959.16 Da        Isoelectric Point: 8.7203

>NTDB_id=608699 LCH16_RS15450 WP_015418104.1 3152755..3155106(-) (comP) [Bacillus velezensis strain CSUSB3]
MILLGVLKKQVNHVILKKFLKFFSVALLLFSIFYFTLVVYYTQNGIIIGTNVVKVSNQELKVVDMTRSSYGRLMGLEIGD
KIVEINGHKPNKENIYGSYLAKVRQLKVERNDKLIKLDNFEFIYLDSPYSFFSYIVPGIFYLLSLICIFYIFRVNLKKDS
ISAYILICFLLCISIAYLSAGGVTRGYSVNRYINLYTFLAVPVLYLNFLHQYFKELNVKFSRGIYILILYNLPLVNIICE
LFEKHIKYDVITSLNLLTFLFEMMVVYVCLILYQIKHRKKDFAYLLKVLLVSNTIAFLPFTLLYIVPLVIFGQYVYSAVI
TAPFLLLIPLALVYQFVVNKIYNIDFLLGRLRYYCLLAVIPSIGIVWVFVVFMNKNRDFNTFQITLFVFLIMLSVFYFKE
VLDYKFRLKRFSEKYNYQDSIFKYTQLIKSVSVLNQVFTHLKATILDVLPVSKAYIFEISSGGEIVYFDKQSTEPNWYPY
KDKFEKVNSEIGKIIEINQGFLMKIGERGTSSYVLLCLSSINTPRLTMDETSWLKTLSFYTSVSMENVLQIEELMDHLQN
LKQQGSNPVWLKKLMFTIEEKQRSDLARDLHDSVLQDLISLKRQCELFLADFKKEEPCQLEVQDKLHQMNEQMSDVILMT
RETCHELRPQLLYDLGLVKAVSKLAAQQQERAPFHIRLNTGRFTAALDLDTQLNLYRIIQEFLSNAMKHSQANEVLIMLI
SIQNKVILHYEDDGVGCNQEEGGGQSMSMGLSGIKERVRALDGRMKIDTSEGNGFKVDIEMEL

Nucleotide


Download         Length: 2352 bp        

>NTDB_id=608699 LCH16_RS15450 WP_015418104.1 3152755..3155106(-) (comP) [Bacillus velezensis strain CSUSB3]
ATGATCCTGCTTGGCGTACTTAAAAAACAAGTGAACCATGTTATTTTGAAGAAGTTTTTAAAGTTTTTTTCGGTTGCCTT
ATTATTGTTTAGTATTTTCTATTTTACTTTAGTAGTTTATTATACTCAAAATGGAATAATTATAGGTACCAATGTAGTTA
AAGTTTCTAATCAAGAACTGAAAGTTGTTGATATGACAAGATCCTCCTATGGAAGATTAATGGGGTTGGAAATTGGAGAC
AAAATTGTTGAAATAAATGGACATAAACCAAATAAAGAAAACATTTATGGCTCTTACTTAGCTAAAGTTAGACAATTAAA
AGTTGAACGTAATGATAAATTAATTAAGTTAGATAACTTTGAATTTATCTATTTAGATAGCCCGTACAGTTTCTTTTCAT
ATATTGTACCAGGTATTTTTTATTTACTGAGTTTAATATGTATTTTTTACATCTTTAGAGTTAATTTGAAGAAAGACAGC
ATATCAGCATATATTCTGATTTGTTTTTTGCTATGTATATCTATTGCTTATTTAAGTGCCGGAGGAGTGACAAGGGGATA
CTCTGTAAATCGTTATATTAATCTTTATACATTTTTAGCAGTGCCTGTTTTGTATCTTAACTTCCTTCATCAATATTTTA
AAGAATTAAACGTGAAATTTTCACGAGGGATTTATATTTTAATTTTGTATAATTTACCTTTAGTGAACATCATATGTGAA
CTATTTGAAAAGCATATAAAGTATGATGTGATTACAAGCCTTAATCTCTTAACTTTTTTATTTGAAATGATGGTGGTTTA
TGTATGTCTTATACTTTATCAAATTAAGCATAGAAAGAAAGATTTTGCTTATTTGTTAAAAGTATTATTAGTATCTAATA
CCATTGCATTCTTACCTTTTACTTTATTATATATTGTTCCTCTTGTGATCTTTGGACAATATGTTTATAGTGCGGTAATC
ACTGCACCTTTTCTTTTGCTTATACCGTTAGCACTGGTATATCAATTTGTTGTTAATAAAATTTATAATATTGATTTTTT
GTTGGGACGCTTGAGGTATTATTGTTTGTTGGCGGTTATCCCCTCAATTGGTATCGTTTGGGTTTTCGTTGTGTTTATGA
ATAAAAATAGAGATTTTAATACTTTTCAAATCACCTTGTTTGTTTTTCTGATTATGCTTTCTGTTTTTTATTTTAAAGAA
GTGCTGGACTATAAGTTCCGCTTAAAGCGTTTCTCAGAAAAGTATAATTATCAAGACAGTATTTTTAAATACACACAATT
GATTAAAAGTGTGTCAGTCTTGAACCAAGTTTTCACACATCTTAAAGCGACAATTTTAGATGTTTTGCCAGTAAGCAAAG
CTTATATTTTTGAAATTAGTTCTGGCGGAGAAATTGTGTATTTTGACAAACAAAGTACAGAACCAAATTGGTATCCCTAT
AAAGACAAATTTGAAAAGGTCAATTCGGAAATCGGCAAAATCATTGAGATTAATCAAGGGTTCCTCATGAAAATTGGCGA
GAGAGGAACAAGTTCTTATGTTTTGCTTTGTTTATCAAGCATAAATACACCAAGACTTACAATGGATGAGACTTCATGGC
TGAAGACGTTATCATTTTATACCAGTGTATCGATGGAAAATGTTCTGCAAATTGAGGAACTTATGGATCACCTCCAAAAT
CTAAAACAACAAGGCTCAAACCCGGTCTGGCTCAAAAAGCTGATGTTTACGATCGAGGAAAAGCAGCGTTCGGATTTGGC
CCGTGATCTGCATGATTCGGTGCTGCAGGATTTAATTTCTTTGAAGCGCCAGTGTGAGCTGTTTCTGGCCGATTTTAAGA
AAGAGGAGCCTTGCCAGTTAGAGGTGCAGGACAAGCTTCATCAGATGAATGAGCAGATGTCGGATGTCATTTTGATGACC
CGGGAGACGTGCCATGAGCTGCGTCCTCAGCTGCTGTATGATTTGGGTCTGGTCAAGGCGGTATCCAAGCTTGCCGCGCA
GCAGCAGGAGCGTGCGCCGTTTCATATCCGTCTGAATACGGGCCGGTTTACGGCGGCTCTGGATTTGGATACGCAGCTGA
ATTTGTACCGCATCATTCAGGAATTTCTTTCGAACGCCATGAAGCATTCACAGGCGAATGAGGTGCTGATTATGCTGATC
AGCATTCAAAATAAAGTGATTCTGCATTATGAAGATGACGGTGTCGGATGCAATCAGGAAGAAGGCGGCGGGCAGTCGAT
GAGCATGGGTCTTTCGGGTATTAAGGAGCGCGTCCGGGCGCTTGACGGACGGATGAAAATCGACACAAGTGAAGGAAACG
GTTTTAAAGTAGATATTGAAATGGAATTGTAA

Domains


Predicted by InterproScan.

(583-652)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

59.792

98.467

0.589