Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   LCH16_RS15445 Genome accession   NZ_CP083943
Coordinates   3152030..3152674 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain CSUSB3     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3147030..3157674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH16_RS15410 (LCH16_15410) - 3148215..3148646 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  LCH16_RS15415 (LCH16_15415) - 3148646..3148987 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  LCH16_RS15420 (LCH16_15420) - 3148980..3150461 (+) 1482 WP_007408671.1 Na+/H+ antiporter subunit D -
  LCH16_RS15425 (LCH16_15425) - 3150467..3150943 (+) 477 WP_224462814.1 Na+/H+ antiporter subunit E -
  LCH16_RS15430 (LCH16_15430) - 3150943..3151227 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  LCH16_RS15435 (LCH16_15435) mnhG 3151211..3151585 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  LCH16_RS15440 (LCH16_15440) - 3151625..3152008 (-) 384 WP_061860832.1 hotdog fold thioesterase -
  LCH16_RS15445 (LCH16_15445) comA 3152030..3152674 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  LCH16_RS15450 (LCH16_15450) comP 3152755..3155106 (-) 2352 WP_015418104.1 sensor histidine kinase Regulator
  LCH16_RS15455 (LCH16_15455) comX 3155084..3155254 (-) 171 WP_015418105.1 competence pheromone ComX -
  LCH16_RS15460 (LCH16_15460) - 3155251..3156180 (-) 930 WP_224462816.1 polyprenyl synthetase family protein -
  LCH16_RS15465 (LCH16_15465) degQ 3156311..3156451 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  LCH16_RS15470 (LCH16_15470) - 3156917..3157258 (+) 342 WP_015418107.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=608698 LCH16_RS15445 WP_003152052.1 3152030..3152674(-) (comA) [Bacillus velezensis strain CSUSB3]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=608698 LCH16_RS15445 WP_003152052.1 3152030..3152674(-) (comA) [Bacillus velezensis strain CSUSB3]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGACGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGACAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864