Detailed information NTG0608647

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: LCH16_RS02020
• Genome accession: NZ_CP083943
• Coordinates: 431126..432274 (+)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain CSUSB3
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 426126..437274

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LCH16_RS02000 (LCH16_02000)	-	426524..427207 (-)	684	WP_224462975.1	ABC transporter ATP-binding protein	-
LCH16_RS02005 (LCH16_02005)	-	427222..428658 (-)	1437	WP_095352405.1	ABC transporter permease	-
LCH16_RS02010 (LCH16_02010)	-	428870..429553 (+)	684	WP_014416901.1	response regulator transcription factor	-
LCH16_RS02015 (LCH16_02015)	-	429540..430973 (+)	1434	WP_015416810.1	HAMP domain-containing sensor histidine kinase	-
LCH16_RS02020 (LCH16_02020)	rapC	431126..432274 (+)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
LCH16_RS02025 (LCH16_02025)	phrC	432258..432377 (+)	120	WP_031378677.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
LCH16_RS02030 (LCH16_02030)	-	432526..432636 (-)	111	WP_369719092.1	YjcZ family sporulation protein	-
LCH16_RS02035 (LCH16_02035)	-	432716..434080 (-)	1365	WP_015416811.1	aspartate kinase	-
LCH16_RS02040 (LCH16_02040)	ceuB	434494..435447 (+)	954	WP_015239156.1	ABC transporter permease	Machinery gene
LCH16_RS02045 (LCH16_02045)	-	435437..436384 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
LCH16_RS02050 (LCH16_02050)	-	436378..437136 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=608647 LCH16_RS02020 WP_007410270.1 431126..432274(+) (rapC) [Bacillus velezensis strain CSUSB3]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=608647 LCH16_RS02020 WP_007410270.1 431126..432274(+) (rapC) [Bacillus velezensis strain CSUSB3]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGATTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568