Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JF568_RS09405 Genome accession   NZ_CP083931
Coordinates   1902269..1903111 (+) Length   280 a.a.
NCBI ID   WP_097114841.1    Uniprot ID   -
Organism   Alysiella filiformis DSM 16848     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1897269..1908111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JF568_RS09385 (JF568_09385) zapD 1897569..1898324 (-) 756 WP_097114838.1 cell division protein ZapD -
  JF568_RS09390 (JF568_09390) coaE 1898311..1898952 (-) 642 WP_224446344.1 dephospho-CoA kinase -
  JF568_RS09395 (JF568_09395) pilF 1899207..1900886 (+) 1680 WP_097114839.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JF568_RS09400 (JF568_09400) pilG 1900910..1902193 (+) 1284 WP_097114840.1 type II secretion system F family protein Machinery gene
  JF568_RS09405 (JF568_09405) pilD 1902269..1903111 (+) 843 WP_097114841.1 A24 family peptidase Machinery gene
  JF568_RS09410 (JF568_09410) - 1903320..1904762 (-) 1443 WP_097114842.1 peptide MFS transporter -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31294.17 Da        Isoelectric Point: 7.6013

>NTDB_id=608588 JF568_RS09405 WP_097114841.1 1902269..1903111(+) (pilD) [Alysiella filiformis DSM 16848]
MNIEVLFALILGLLVGSFLNVVIYRLPVMMENDWTQFSKEHLGLIQENDPQPEKFNLMTPPSRCGNCGSPVRPWQNMPII
SWLILRGKCASCHTPISIRYPLVELLTGLLFALVAWQYGWSPITVWGCLFTAFVIALTFIDADTQYLPDQLTMPLIWLGF
LFNWHTGFISLEQAMLGAVVGYMSLWILSNAYKLWRGVDGMGGGDFKLLAAVGAWTGLQNLAVIVLMAACVGIVAGLIKR
VAKQQPMAFGPCLAIAGWIVFVWHDKVLYGVNWWLHKSGF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=608588 JF568_RS09405 WP_097114841.1 1902269..1903111(+) (pilD) [Alysiella filiformis DSM 16848]
ATGAATATTGAAGTGCTGTTTGCGCTGATTTTGGGTTTATTGGTGGGCAGTTTTTTGAATGTGGTCATTTACAGGCTGCC
TGTGATGATGGAAAACGATTGGACGCAATTTTCCAAAGAACATTTGGGCTTGATTCAGGAAAATGACCCGCAGCCTGAAA
AATTCAATTTGATGACCCCACCATCTCGTTGTGGTAATTGCGGTTCGCCTGTGCGCCCTTGGCAAAATATGCCCATTATC
AGTTGGTTGATTTTGCGTGGGAAATGTGCCAGTTGCCACACGCCCATTAGCATACGCTATCCTTTGGTGGAGTTGCTTAC
AGGTTTGCTGTTTGCGTTGGTGGCTTGGCAATATGGTTGGTCGCCGATTACCGTGTGGGGCTGCCTGTTTACCGCCTTTG
TGATTGCACTGACTTTTATTGATGCAGACACGCAATATTTGCCCGACCAACTGACTATGCCATTGATTTGGTTGGGATTT
TTGTTTAACTGGCACACGGGTTTCATCAGTTTGGAACAAGCGATGTTGGGTGCGGTGGTGGGCTACATGAGTTTGTGGAT
TTTGTCCAATGCCTACAAATTGTGGCGCGGTGTGGACGGCATGGGCGGTGGCGATTTCAAATTGTTGGCGGCGGTGGGGG
CTTGGACGGGCTTGCAGAATTTGGCGGTGATTGTGCTGATGGCGGCTTGCGTGGGCATTGTGGCTGGCTTAATCAAACGT
GTGGCAAAACAACAGCCTATGGCATTTGGTCCTTGTTTGGCAATTGCGGGGTGGATTGTGTTTGTGTGGCACGATAAGGT
CTTGTATGGCGTGAATTGGTGGTTGCACAAATCGGGTTTTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(10-118)

Type IV leader peptidase family (Peptidase_A24)

(129-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

61.029

97.143

0.593
  pilD Vibrio campbellii strain DS40M4

47.101

98.571

0.464
  pilD Vibrio cholerae strain A1552

46.154

97.5

0.45
  pilD Acinetobacter nosocomialis M2

47.17

94.643

0.446
  pilD Acinetobacter baumannii D1279779

46.792

94.643

0.443