Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   NMD26_RS00180 Genome accession   NZ_CP101005
Coordinates   32966..33556 (+) Length   196 a.a.
NCBI ID   WP_032279166.1    Uniprot ID   -
Organism   Escherichia coli strain ET82     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 27966..38556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD26_RS00145 (NMD26_00140) yidF 28082..28579 (+) 498 WP_000148061.1 radical SAM protein -
  NMD26_RS00150 (NMD26_00145) emrD 28587..29771 (-) 1185 WP_000828746.1 multidrug efflux MFS transporter EmrD -
  NMD26_RS00155 (NMD26_00150) ysdE 29853..29927 (+) 75 WP_211180519.1 protein YsdE -
  NMD26_RS00160 (NMD26_00155) tisB 30051..30140 (-) 90 WP_000060506.1 type I toxin-antitoxin system toxin TisB -
  NMD26_RS00165 (NMD26_00160) ivbL 30705..30803 (+) 99 WP_001300753.1 ilvB operon leader peptide IvbL -
  NMD26_RS00170 (NMD26_00165) ilvB 30909..32597 (+) 1689 WP_032279167.1 acetolactate synthase large subunit -
  NMD26_RS00175 (NMD26_00170) ilvN 32601..32891 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  NMD26_RS00180 (NMD26_00175) letA 32966..33556 (+) 591 WP_032279166.1 transcriptional regulator UhpA Regulator
  NMD26_RS00185 (NMD26_00180) uhpB 33556..35058 (+) 1503 WP_032279164.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  NMD26_RS00190 (NMD26_00185) uhpC 35068..36387 (+) 1320 WP_000936566.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  NMD26_RS00195 (NMD26_00190) uhpT 36525..37916 (+) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20888.36 Da        Isoelectric Point: 6.6328

>NTDB_id=608550 NMD26_RS00180 WP_032279166.1 32966..33556(+) (letA) [Escherichia coli strain ET82]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLKLLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=608550 NMD26_RS00180 WP_032279166.1 32966..33556(+) (letA) [Escherichia coli strain ET82]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGAAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACGATTATGCTCTCCGTT
CACGACAGTCCTGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCACGCGGCTTTCTTTCCAAACGCTGTAGCCCGGATGA
ACTCATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GTCAGGACCCGCTAACCAAACGTGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTAGA
GCTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38

100

0.388
  letA Legionella pneumophila strain ERS1305867

38

100

0.388
  degU Bacillus subtilis subsp. subtilis str. 168

32.883

100

0.372