Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KE3_RS08545 Genome accession   NC_021900
Coordinates   1696976..1697482 (-) Length   168 a.a.
NCBI ID   WP_020917424.1    Uniprot ID   A0AB33ANQ2
Organism   Streptococcus lutetiensis 033     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1691976..1702482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KE3_RS08515 (KE3_1757) - 1693437..1694381 (+) 945 WP_020917419.1 magnesium transporter CorA family protein -
  KE3_RS08520 (KE3_1758) - 1694655..1695311 (+) 657 WP_020917420.1 DUF1129 domain-containing protein -
  KE3_RS10640 (KE3_1759) - 1695399..1695572 (-) 174 WP_187288139.1 hypothetical protein -
  KE3_RS08530 (KE3_1761) - 1695779..1696003 (-) 225 WP_043895293.1 helix-turn-helix domain-containing protein -
  KE3_RS10985 - 1696005..1696331 (-) 327 WP_228380489.1 hypothetical protein -
  KE3_RS10990 - 1696353..1696529 (-) 177 WP_228380490.1 hypothetical protein -
  KE3_RS08540 (KE3_1762) rpsR 1696676..1696915 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  KE3_RS08545 (KE3_1763) ssbA 1696976..1697482 (-) 507 WP_020917424.1 single-stranded DNA-binding protein Machinery gene
  KE3_RS08550 (KE3_1764) rpsF 1697494..1697784 (-) 291 WP_006531977.1 30S ribosomal protein S6 -
  KE3_RS08555 (KE3_1765) - 1697981..1698127 (-) 147 WP_228380491.1 ATP-dependent protease -
  KE3_RS10525 (KE3_1766) - 1698318..1698638 (-) 321 WP_020917426.1 sortase A -
  KE3_RS10995 (KE3_1767) - 1698644..1698829 (-) 186 WP_020917427.1 hypothetical protein -
  KE3_RS08565 (KE3_1768) - 1698902..1699531 (-) 630 WP_020917428.1 hypothetical protein -
  KE3_RS08570 lepB 1699587..1700171 (-) 585 Protein_1683 signal peptidase I -
  KE3_RS10645 (KE3_1769) - 1700158..1700376 (-) 219 Protein_1684 DNA repair protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18641.27 Da        Isoelectric Point: 4.7294

>NTDB_id=60841 KE3_RS08545 WP_020917424.1 1696976..1697482(-) (ssbA) [Streptococcus lutetiensis 033]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLANWAKKGTLVGVTGRIQTR
NYENQQGQRVYVTEVVADNFQILESRATREGQSGGSYNGEFNNNSSFGGSSNGGFSSQPSQQTPNFGRDESPFGNSNPMD
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=60841 KE3_RS08545 WP_020917424.1 1696976..1697482(-) (ssbA) [Streptococcus lutetiensis 033]
ATGATTAATAATGTAGTACTTGTCGGTCGCATGACCCGCGATGCAGAACTCCGTTACACACCATCTAATCAAGCAGTTGC
GACATTTACACTTGCTGTAAACCGTAACTTCAAGAATCAAAATGGTGAACGCGAAGCAGATTTTATTAACTGTGTTATTT
GGCGTCAGCAAGCTGAAAACTTGGCTAACTGGGCTAAAAAAGGCACATTGGTTGGTGTTACTGGTCGTATTCAGACTCGT
AACTATGAAAACCAACAAGGCCAACGTGTTTACGTAACTGAGGTCGTTGCAGATAATTTCCAAATCTTGGAAAGTCGTGC
TACACGTGAAGGTCAATCAGGTGGTTCTTACAACGGTGAATTTAACAACAATTCATCATTTGGTGGATCTTCTAATGGTG
GTTTCTCATCACAACCTTCACAACAAACACCTAACTTTGGTCGTGACGAAAGCCCATTTGGTAATTCAAACCCAATGGAC
ATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.112

100

0.637
  ssb Latilactobacillus sakei subsp. sakei 23K

61.765

100

0.625
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.095

0.369

Multiple sequence alignment