Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LCD50_RS01430 Genome accession   NZ_CP083857
Coordinates   305967..306494 (+) Length   175 a.a.
NCBI ID   WP_014882152.1    Uniprot ID   A0A145DXU8
Organism   Enterobacter kobei strain 12379-yvys     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 300967..311494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCD50_RS01410 (LCD50_01415) aphA 301291..302004 (+) 714 WP_014882148.1 acid phosphatase AphA -
  LCD50_RS01415 (LCD50_01420) - 302118..302534 (+) 417 WP_014882149.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LCD50_RS01420 (LCD50_01425) - 302537..302890 (+) 354 WP_014882150.1 MmcQ/YjbR family DNA-binding protein -
  LCD50_RS01425 (LCD50_01430) uvrA 302893..305715 (-) 2823 WP_247170673.1 excinuclease ABC subunit UvrA -
  LCD50_RS01430 (LCD50_01435) ssb 305967..306494 (+) 528 WP_014882152.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LCD50_RS01435 (LCD50_01440) - 306554..306835 (-) 282 WP_014882153.1 YjcB family protein -
  LCD50_RS01440 (LCD50_01445) - 307362..308927 (+) 1566 WP_023336605.1 EAL domain-containing protein -
  LCD50_RS01445 (LCD50_01450) soxS 308934..309260 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  LCD50_RS01450 (LCD50_01455) soxR 309359..309817 (+) 459 WP_014882155.1 redox-sensitive transcriptional activator SoxR -
  LCD50_RS01455 (LCD50_01460) - 310199..310870 (+) 672 WP_023331807.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18721.73 Da        Isoelectric Point: 5.2456

>NTDB_id=608267 LCD50_RS01430 WP_014882152.1 305967..306494(+) (ssb) [Enterobacter kobei strain 12379-yvys]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=608267 LCD50_RS01430 WP_014882152.1 305967..306494(+) (ssb) [Enterobacter kobei strain 12379-yvys]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACTG
AATGGCACCGCGTGGTGCTGTTTGGCAAACTGGCAGAAGTTGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGCACCCGTAAATGGACCGATCAGTCCGGCGCTGAGAAGTACACCACCGAAGTTGTGGTAAACGTTGG
CGGTACCATGCAGATGCTGGGCGGCCGCCAGGGCGGTGGCGCACCAGCAGGTGGCGGTCAGCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCA
CCGTCTAACGAGCCACCAATGGACTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A145DXU8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.783
  ssb Glaesserella parasuis strain SC1401

56.522

100

0.594
  ssb Neisseria meningitidis MC58

46.629

100

0.474
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.474
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.366