Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NMD40_RS09205 Genome accession   NZ_CP100958
Coordinates   1894033..1895460 (-) Length   475 a.a.
NCBI ID   WP_104772124.1    Uniprot ID   -
Organism   Escherichia coli strain ET450     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1889033..1900460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD40_RS09175 (NMD40_09125) yeeZ 1889088..1889912 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  NMD40_RS09180 (NMD40_09130) yeeY 1889958..1890887 (+) 930 WP_104772125.1 LysR substrate-binding domain-containing protein -
  NMD40_RS09185 (NMD40_09135) yoeI 1891102..1891164 (+) 63 WP_010723108.1 membrane protein YoeI -
  NMD40_RS09190 (NMD40_09140) plaP 1891154..1892512 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NMD40_RS09195 (NMD40_09145) tsuA 1892691..1893749 (+) 1059 WP_000492315.1 thiosulfate utilization transporter TsuA/YeeE -
  NMD40_RS09200 (NMD40_09150) tsuB 1893763..1893990 (+) 228 WP_000985280.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NMD40_RS09205 (NMD40_09155) sbcB 1894033..1895460 (-) 1428 WP_104772124.1 exodeoxyribonuclease I Machinery gene
  NMD40_RS09210 (NMD40_09160) dacD 1895669..1896835 (+) 1167 WP_001442313.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NMD40_RS09215 (NMD40_09165) sbmC 1896954..1897427 (+) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  NMD40_RS09220 (NMD40_09170) yeeA 1897626..1898684 (+) 1059 WP_001200891.1 FUSC family protein -
  NMD40_RS09225 (NMD40_09175) tmaR 1898856..1899185 (+) 330 WP_000450409.1 DUF496 family protein -
  NMD40_RS09230 (NMD40_09180) - 1899286..1899471 (-) 186 Protein_1803 EutP/PduV family microcompartment system protein -
  NMD40_RS09235 (NMD40_09185) - 1899540..1899668 (+) 129 Protein_1804 transposase domain-containing protein -
  NMD40_RS09240 (NMD40_09190) - 1899957..1900049 (-) 93 Protein_1805 DUF957 domain-containing protein -
  NMD40_RS09245 (NMD40_09195) yeeW 1900083..1900277 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54514.84 Da        Isoelectric Point: 5.4740

>NTDB_id=607774 NMD40_RS09205 WP_104772124.1 1894033..1895460(-) (sbcB) [Escherichia coli strain ET450]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=607774 NMD40_RS09205 WP_104772124.1 1894033..1895460(-) (sbcB) [Escherichia coli strain ET450]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCATTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577