Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   K8374_RS06665 Genome accession   NZ_CP083746
Coordinates   1425740..1427959 (+) Length   739 a.a.
NCBI ID   WP_224458391.1    Uniprot ID   -
Organism   Pseudomonas sp. p1(2021b)     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1420740..1432959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8374_RS06640 (K8374_06640) - 1421459..1422013 (-) 555 WP_224458387.1 fimbrial protein -
  K8374_RS06645 (K8374_06645) - 1422613..1423236 (+) 624 WP_224458388.1 glutathione S-transferase -
  K8374_RS06650 (K8374_06650) - 1423376..1424308 (+) 933 WP_084855009.1 ABC transporter ATP-binding protein -
  K8374_RS06655 (K8374_06655) - 1424305..1425084 (+) 780 WP_224458389.1 ABC transporter permease -
  K8374_RS06660 (K8374_06660) - 1424968..1425597 (-) 630 WP_224458390.1 DUF2062 domain-containing protein -
  K8374_RS06665 (K8374_06665) comA 1425740..1427959 (+) 2220 WP_224458391.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K8374_RS06670 (K8374_06670) exbB 1428086..1428721 (+) 636 WP_196144992.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K8374_RS06675 (K8374_06675) - 1428718..1429152 (+) 435 WP_224458392.1 ExbD/TolR family protein -
  K8374_RS06680 (K8374_06680) lpxK 1429152..1430171 (+) 1020 WP_224458393.1 tetraacyldisaccharide 4'-kinase -
  K8374_RS06685 (K8374_06685) - 1430206..1430391 (+) 186 WP_003247142.1 Trm112 family protein -
  K8374_RS06690 (K8374_06690) kdsB 1430388..1431152 (+) 765 WP_224458394.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K8374_RS06695 (K8374_06695) - 1431152..1431616 (+) 465 WP_224458395.1 low molecular weight protein-tyrosine-phosphatase -
  K8374_RS06700 (K8374_06700) murB 1431613..1432632 (+) 1020 WP_224458396.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 80044.21 Da        Isoelectric Point: 10.2578

>NTDB_id=607608 K8374_RS06665 WP_224458391.1 1425740..1427959(+) (comA) [Pseudomonas sp. p1(2021b)]
MRTGMLALALGLLSLGVLPALPSVGWWAVLLVLGLVCLCSRAWPLGWFLLGVCWACWSAQMALDDRLAPVLDGRTLWLEG
RVVGLPIQAPQRVRFEVEDAVSRRAGLPRRLQLNWFDGPDIRAGERWRLAVTLKQPHGLLNPHGPDREAALLARRIGAVG
TVKAGHLLEAAPGNWRDGLRQRLLAIDAQGREAVLVALVLGDGSGLSQRDWQALQATGTVHLMVISGQHIGLVAGLVYGL
VALLARLGAWPARLPWLPWACALALVAALGYGWLAGFGVPVQRACLMLAVVLLWRLRFRHLGVSTPLLMAMCGVLLVEPL
ASLLPGFWLSFAAVGVLTFCFAGRLGAWRPWQAWSRAQWVIAVGLLPPLLALGLPISLTAPLMNLVAVPWISFVVLPLAL
LGSALLAVGAFAQGLLWLAGGSLDVLFEVLGWVASRRPAWLPPALPLGAWLLVCLGAMLVLLPRGIPLRGLGGVMLLALW
TPREHVPHGQVEVLQLDVGQGLAVLLRTRHHNLLYDAGPAKGSSDLGEQVVLPTLRKLGVRQLDLMLISHGHADHAGGAA
AIGRGLPIAQVLAGEPGQLAVELEALPCASGERWRWDGVDFALWQWPQGPDSNERSCVLRVEAQGERLLLAGDMEAGAER
AWLAATESPRIDWLQSPHHGSRSSSTEPFIRALAPRGVLISRGRYNGFGHPHPQVLERYRRHGLSVHDTALEGALRLRLG
SHGVVEGMREQRRFWRQVQ

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=607608 K8374_RS06665 WP_224458391.1 1425740..1427959(+) (comA) [Pseudomonas sp. p1(2021b)]
ATGCGCACAGGGATGTTGGCGCTCGCACTCGGGTTGTTGAGCCTGGGTGTTCTGCCAGCCTTGCCATCGGTCGGTTGGTG
GGCGGTTTTGCTGGTGCTGGGCCTGGTATGCCTGTGCAGCCGGGCATGGCCATTGGGGTGGTTTCTGCTCGGCGTCTGCT
GGGCGTGCTGGTCGGCACAGATGGCATTGGATGACCGCCTGGCTCCCGTACTCGATGGTCGCACCTTGTGGCTCGAAGGG
CGGGTAGTGGGGTTGCCGATCCAGGCGCCGCAAAGGGTGCGCTTCGAAGTGGAGGATGCGGTCTCGCGTCGTGCCGGGCT
GCCACGACGCCTGCAACTGAACTGGTTCGATGGCCCCGACATCCGCGCGGGCGAGCGCTGGCGGCTGGCTGTCACGCTCA
AGCAACCCCATGGCCTGCTCAACCCCCACGGCCCGGACCGCGAGGCGGCCTTGCTGGCGCGGCGCATCGGGGCGGTCGGT
ACGGTCAAGGCCGGCCATCTGTTGGAGGCGGCGCCAGGCAACTGGCGAGACGGGTTGCGTCAACGGTTGCTGGCGATCGA
CGCCCAGGGGCGCGAAGCCGTCCTGGTCGCGCTGGTGCTGGGGGATGGTTCGGGTCTTTCCCAACGCGACTGGCAGGCCT
TGCAGGCCACCGGCACGGTGCATCTGATGGTGATTTCCGGCCAGCATATCGGTTTGGTGGCCGGGTTGGTCTATGGCCTG
GTGGCGCTGCTGGCGCGTCTGGGAGCCTGGCCGGCACGCCTGCCCTGGTTGCCCTGGGCGTGTGCGCTGGCCTTGGTCGC
CGCCTTGGGCTACGGCTGGCTCGCAGGCTTCGGGGTGCCGGTGCAGCGGGCCTGCCTGATGCTCGCGGTGGTACTGCTGT
GGCGCCTGCGTTTTCGTCACTTGGGCGTGTCCACACCGTTGCTCATGGCCATGTGCGGTGTCCTGCTGGTCGAGCCGCTG
GCCAGTTTGCTGCCGGGCTTCTGGCTCTCGTTCGCCGCGGTCGGGGTGCTGACTTTCTGCTTCGCCGGGCGGCTGGGAGC
TTGGCGACCCTGGCAAGCCTGGAGCCGGGCTCAATGGGTGATTGCGGTCGGCCTGCTGCCGCCATTGCTGGCGTTGGGGC
TGCCGATCAGCCTGACGGCTCCGCTGATGAACCTGGTGGCGGTGCCCTGGATCAGCTTCGTGGTGCTGCCGTTGGCCTTG
CTCGGCAGTGCGTTGTTGGCCGTTGGCGCATTCGCGCAAGGGCTGTTGTGGCTCGCTGGGGGCTCGCTGGATGTGTTGTT
CGAGGTGCTGGGCTGGGTGGCGAGCCGGCGCCCGGCCTGGCTGCCGCCGGCCTTGCCGCTGGGGGCGTGGCTGCTGGTTT
GCCTGGGCGCGATGTTGGTGCTCCTGCCTCGGGGGATCCCGCTGCGGGGCTTGGGTGGCGTGATGTTGCTGGCGCTGTGG
ACGCCCCGGGAGCACGTGCCCCACGGGCAGGTGGAGGTGCTGCAGTTGGATGTCGGGCAGGGCCTGGCCGTATTGCTGCG
TACCCGCCACCACAACCTACTCTACGACGCCGGGCCCGCCAAGGGCAGCAGCGACCTGGGCGAGCAGGTCGTGTTGCCAA
CCCTGCGCAAGCTGGGCGTGAGGCAACTGGACCTGATGCTGATCAGCCACGGCCATGCCGACCATGCCGGCGGCGCCGCG
GCCATCGGTCGAGGCCTGCCGATCGCCCAGGTGCTCGCCGGCGAGCCCGGGCAGCTGGCGGTCGAACTGGAGGCGCTGCC
GTGCGCCAGTGGTGAGCGTTGGCGCTGGGATGGGGTGGACTTCGCGCTCTGGCAATGGCCACAGGGGCCGGACAGCAACG
AGCGATCCTGCGTGCTGCGGGTCGAGGCGCAGGGCGAGCGCCTGTTGCTGGCAGGCGACATGGAGGCCGGCGCCGAGCGG
GCCTGGCTGGCCGCGACCGAGTCGCCGCGTATCGACTGGCTGCAGTCGCCTCACCATGGCAGCCGCAGTTCGTCCACCGA
GCCGTTCATCCGGGCCCTGGCGCCGCGTGGCGTGTTGATTTCGCGCGGGCGGTACAACGGTTTCGGGCACCCGCATCCGC
AGGTATTGGAGCGCTATCGGCGGCATGGGTTGAGTGTGCATGACACGGCGTTGGAAGGGGCGTTGCGTTTGCGGCTGGGG
AGCCATGGGGTCGTGGAGGGCATGCGGGAGCAGCGGCGGTTCTGGCGGCAGGTGCAGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-165)

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.971

97.294

0.574
  comA Ralstonia pseudosolanacearum GMI1000

35.121

100

0.372