Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   K8374_RS06670 Genome accession   NZ_CP083746
Coordinates   1428086..1428721 (+) Length   211 a.a.
NCBI ID   WP_196144992.1    Uniprot ID   -
Organism   Pseudomonas sp. p1(2021b)     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1423086..1433721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8374_RS06650 (K8374_06650) - 1423376..1424308 (+) 933 WP_084855009.1 ABC transporter ATP-binding protein -
  K8374_RS06655 (K8374_06655) - 1424305..1425084 (+) 780 WP_224458389.1 ABC transporter permease -
  K8374_RS06660 (K8374_06660) - 1424968..1425597 (-) 630 WP_224458390.1 DUF2062 domain-containing protein -
  K8374_RS06665 (K8374_06665) comA 1425740..1427959 (+) 2220 WP_224458391.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K8374_RS06670 (K8374_06670) exbB 1428086..1428721 (+) 636 WP_196144992.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K8374_RS06675 (K8374_06675) - 1428718..1429152 (+) 435 WP_224458392.1 ExbD/TolR family protein -
  K8374_RS06680 (K8374_06680) lpxK 1429152..1430171 (+) 1020 WP_224458393.1 tetraacyldisaccharide 4'-kinase -
  K8374_RS06685 (K8374_06685) - 1430206..1430391 (+) 186 WP_003247142.1 Trm112 family protein -
  K8374_RS06690 (K8374_06690) kdsB 1430388..1431152 (+) 765 WP_224458394.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K8374_RS06695 (K8374_06695) - 1431152..1431616 (+) 465 WP_224458395.1 low molecular weight protein-tyrosine-phosphatase -
  K8374_RS06700 (K8374_06700) murB 1431613..1432632 (+) 1020 WP_224458396.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22826.04 Da        Isoelectric Point: 7.3616

>NTDB_id=607609 K8374_RS06670 WP_196144992.1 1428086..1428721(+) (exbB) [Pseudomonas sp. p1(2021b)]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWVWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANPAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=607609 K8374_RS06670 WP_196144992.1 1428086..1428721(+) (exbB) [Pseudomonas sp. p1(2021b)]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCTATCGTCGC
CGAGCGCCTGTGGACCCTTCGCGCCAGTCGCGTGACCCCGCCGCACCTGCTGGGCCAGGTGTGGGTGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGATTCGCCGCTGGGCGAGATCCTCGCCGCGGGCCTGGCCAAC
TCCCGCCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCGTCGCGGGTCATTCACGAGCTGGAGCGCTACAT
CAGCACCTTGGGCACCATCGCGGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACGGTACTGGGCATGATCGATATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACCCGGCCGTGCTCGCCGGGGGTATCTCCAAGGCCCTGGTCACCACCGCG
GCGGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCAACGGCGCATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTCGAGGTGCTGCAGGGCGACCGCGAAGTCGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.517

100

0.815