Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   LAZ96_RS02395 Genome accession   NZ_CP083715
Coordinates   462741..463076 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain DMB05     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 457741..468076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAZ96_RS02375 (LAZ96_02375) gcvT 458347..459447 (-) 1101 WP_017418134.1 glycine cleavage system aminomethyltransferase GcvT -
  LAZ96_RS02380 (LAZ96_02380) - 459871..461541 (+) 1671 WP_021494309.1 DEAD/DEAH box helicase -
  LAZ96_RS02385 (LAZ96_02385) - 461563..462357 (+) 795 WP_014418368.1 YqhG family protein -
  LAZ96_RS02390 (LAZ96_02390) sinI 462534..462707 (+) 174 WP_014418369.1 anti-repressor SinI Regulator
  LAZ96_RS02395 (LAZ96_02395) sinR 462741..463076 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  LAZ96_RS02400 (LAZ96_02400) tasA 463124..463909 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  LAZ96_RS02405 (LAZ96_02405) sipW 463974..464558 (-) 585 WP_014418370.1 signal peptidase I SipW -
  LAZ96_RS02410 (LAZ96_02410) tapA 464530..465201 (-) 672 WP_025649852.1 amyloid fiber anchoring/assembly protein TapA -
  LAZ96_RS02415 (LAZ96_02415) - 465460..465789 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  LAZ96_RS02420 (LAZ96_02420) - 465830..466009 (-) 180 WP_003153093.1 YqzE family protein -
  LAZ96_RS02425 (LAZ96_02425) comGG 466066..466443 (-) 378 WP_017418138.1 competence type IV pilus minor pilin ComGG Machinery gene
  LAZ96_RS02430 (LAZ96_02430) comGF 466444..466839 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  LAZ96_RS02435 (LAZ96_02435) comGE 466853..467167 (-) 315 WP_017418140.1 competence type IV pilus minor pilin ComGE Machinery gene
  LAZ96_RS02440 (LAZ96_02440) comGD 467151..467588 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  LAZ96_RS02445 (LAZ96_02445) comGC 467578..467886 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=607378 LAZ96_RS02395 WP_003153104.1 462741..463076(+) (sinR) [Bacillus velezensis strain DMB05]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=607378 LAZ96_RS02395 WP_003153104.1 462741..463076(+) (sinR) [Bacillus velezensis strain DMB05]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991