Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LA331_RS09505 Genome accession   NZ_CP083658
Coordinates   1914716..1916137 (+) Length   473 a.a.
NCBI ID   WP_414632198.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain FDAARGOS_1487     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1909716..1921137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA331_RS09485 (LA331_09485) thrC 1910003..1911142 (+) 1140 WP_005233478.1 threonine synthase -
  LA331_RS09490 (LA331_09490) - 1911201..1912253 (-) 1053 WP_005233476.1 serine hydrolase -
  LA331_RS09495 (LA331_09495) - 1912470..1913105 (+) 636 WP_005233474.1 response regulator transcription factor GacA -
  LA331_RS09500 (LA331_09500) pilS 1913133..1914698 (+) 1566 WP_005233472.1 sensor histidine kinase Regulator
  LA331_RS09505 (LA331_09505) pilR 1914716..1916137 (+) 1422 WP_414632198.1 sigma-54-dependent transcriptional regulator Regulator
  LA331_RS09510 (LA331_09510) - 1916138..1917310 (-) 1173 WP_005233470.1 S41 family peptidase -
  LA331_RS09515 (LA331_09515) gpmI 1917334..1918881 (-) 1548 WP_005233469.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  LA331_RS09520 (LA331_09520) lptG 1919006..1920076 (-) 1071 WP_005233468.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53664.85 Da        Isoelectric Point: 6.0060

>NTDB_id=607191 LA331_RS09505 WP_414632198.1 1914716..1916137(+) (pilR) [Acinetobacter variabilis strain FDAARGOS_1487]
MVEQQPLVLLVDDEEDLCTLMQMSLMRMGIRTHIAHRLEDAKKFLTDHQYDACLTDLNLPDGNGLQLLDWINQHSPYLPV
AVLTAYGNMDIAIAALKAGAFDFVSKPINQKHLEQLLQKALNKPVDYYQNNSNDSLEHKLLIGQSLPIQQLRVTLKKIAR
SQAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLIQSAHGGSLFLD
EIAELPLSMQVKLLRAVQEKRIRPVGSDTEIDVDFRVISASHQDLDALVQQGKFRQDLFFRIHVMDLVLPPLRERGQDIL
LLAEHFIQKICQEWEIPAKKLTERSKEFLLEQYYPGNVRELRNIIERAIILSDEDKIDLQHLQTAPLRHMAPVLSETANL
AEPTSSSDQIIIPKKLPEEGLELYLEKIEKEILLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEEEE

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=607191 LA331_RS09505 WP_414632198.1 1914716..1916137(+) (pilR) [Acinetobacter variabilis strain FDAARGOS_1487]
ATTGTGGAACAACAACCACTGGTTTTATTGGTGGATGATGAGGAAGATCTATGTACCCTCATGCAAATGTCATTGATGCG
CATGGGAATCCGTACACATATTGCCCATCGTCTGGAAGATGCAAAAAAATTTCTGACAGATCATCAATATGATGCCTGTC
TGACGGATCTAAATCTTCCTGATGGCAATGGTCTGCAATTACTGGACTGGATTAACCAGCATTCCCCTTACCTTCCGGTA
GCTGTTCTAACGGCCTATGGTAATATGGATATTGCTATTGCTGCACTCAAGGCAGGTGCATTTGACTTTGTTAGCAAACC
GATCAATCAAAAGCATCTGGAGCAACTGCTGCAAAAAGCACTAAATAAACCAGTAGACTATTATCAGAATAATTCCAATG
ATTCACTAGAACATAAGCTGCTGATTGGACAATCTCTGCCTATTCAGCAATTGCGTGTCACCTTGAAAAAAATTGCCCGT
TCCCAGGCACCCGTGTTTATTACTGGCGAATCAGGTACCGGGAAAGAAGTTGTCGCCAATCTGGTTCATCGTCTCAGCAA
TCGCAATGAAGGACCTTTTATCGCAATTAACTGCGGTGCAATCCCGACTGAACTGATGGAAAGTGAACTGTTTGGCCATA
AGAAAGGCAGCTTTACTGGCGCGACACAGGACAAGCAGGGACTAATTCAGTCTGCCCATGGAGGTAGTTTGTTCTTAGAT
GAGATTGCTGAATTACCGTTATCTATGCAGGTCAAACTGTTACGTGCTGTTCAGGAAAAACGCATTCGTCCAGTCGGTTC
CGATACTGAAATTGATGTCGATTTCCGTGTCATCAGTGCCAGCCATCAGGATCTCGATGCGCTGGTACAACAAGGCAAAT
TCCGTCAGGACTTGTTCTTCCGTATTCATGTGATGGATCTGGTCTTACCACCCCTGCGTGAGCGCGGCCAGGATATTCTG
CTCCTCGCTGAGCATTTTATTCAAAAGATCTGCCAAGAATGGGAAATTCCTGCGAAAAAGTTGACGGAACGGAGTAAAGA
ATTTTTACTCGAGCAATATTATCCGGGCAATGTACGCGAACTGCGCAACATTATTGAACGCGCAATTATTTTGAGTGATG
AAGACAAGATTGATCTTCAGCATCTGCAAACTGCTCCACTACGTCATATGGCACCTGTCTTATCAGAAACTGCCAATCTG
GCAGAGCCGACTTCATCTTCGGATCAGATCATTATTCCCAAGAAACTCCCCGAAGAAGGTCTGGAACTGTATTTAGAAAA
GATTGAAAAAGAAATTCTGTTGAATGCTTTGAATCTGACACACTGGAACCGTACATTGGCCGCGAAGAAACTGGGGATGT
CATTTCGGTCTTTACGTTACCGTCTGAAAAAATTCGGACTGGATACCGAAGAAGAGGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(141-307)

Bacterial regulatory protein, Fis family (HTH_8)

(425-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

75.884

100

0.772
  pilR Pseudomonas aeruginosa PAK

49.024

97.463

0.478