Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LA331_RS09500 Genome accession   NZ_CP083658
Coordinates   1913133..1914698 (+) Length   521 a.a.
NCBI ID   WP_005233472.1    Uniprot ID   N9P740
Organism   Acinetobacter variabilis strain FDAARGOS_1487     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1908133..1919698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA331_RS09480 (LA331_09480) - 1908641..1909945 (+) 1305 WP_005233480.1 homoserine dehydrogenase -
  LA331_RS09485 (LA331_09485) thrC 1910003..1911142 (+) 1140 WP_005233478.1 threonine synthase -
  LA331_RS09490 (LA331_09490) - 1911201..1912253 (-) 1053 WP_005233476.1 serine hydrolase -
  LA331_RS09495 (LA331_09495) - 1912470..1913105 (+) 636 WP_005233474.1 response regulator transcription factor GacA -
  LA331_RS09500 (LA331_09500) pilS 1913133..1914698 (+) 1566 WP_005233472.1 sensor histidine kinase Regulator
  LA331_RS09505 (LA331_09505) pilR 1914716..1916137 (+) 1422 WP_414632198.1 sigma-54-dependent transcriptional regulator Regulator
  LA331_RS09510 (LA331_09510) - 1916138..1917310 (-) 1173 WP_005233470.1 S41 family peptidase -
  LA331_RS09515 (LA331_09515) gpmI 1917334..1918881 (-) 1548 WP_005233469.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59626.63 Da        Isoelectric Point: 6.3346

>NTDB_id=607190 LA331_RS09500 WP_005233472.1 1913133..1914698(+) (pilS) [Acinetobacter variabilis strain FDAARGOS_1487]
MAQTSSYSELNQYHLGLWYSAYRLIISTGLLLIFLLTYPDMTADYQYPKLYHYALMIGVAVNTVQLFTLRWVKHLIQPQF
ILIFASDVFFLSLLTLASQGPNVHLGLIFVITIFSASLLLDAKKALIVTLIAVISIIYQHFIGSIFAFSSLTNIGNSALL
AFLFFVVYGSGQIAVRRFQILENLNFSQSLELYRLQNINRYILEQIETGYLVLDENYHVVLSNPAACHLLGIEPMYAHER
FSLYQSQNDLFELIRFENLENGERFQFESQQSRYNIHVQVQKLIVPHQTLTLLVLQDARKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLYLDSEPEQQQVLHQMISRQATRIDRIIQDTLNMVKNKETHPVVIQLNEFIPLFIQEDLADVAD
QIQFNIDVPLAIQFDEAQLRQILINLIRNAIRHNSPDSSHIQLNIHPYEHKVWIDVRDFGSGVATHDQELLFKPFFSTSI
HGTGLGLYLSHSFCEANQAQLNYISQEQGACFRISCQRVTA

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=607190 LA331_RS09500 WP_005233472.1 1913133..1914698(+) (pilS) [Acinetobacter variabilis strain FDAARGOS_1487]
ATGGCGCAAACATCCAGTTATTCTGAACTGAATCAATATCATCTGGGCCTATGGTATAGCGCATACCGCCTGATTATCAG
CACGGGTCTGTTGCTGATTTTCCTGCTGACTTATCCCGATATGACTGCGGATTATCAGTATCCTAAACTCTATCACTATG
CCTTAATGATTGGCGTCGCCGTCAATACTGTGCAGCTGTTTACACTAAGATGGGTAAAGCACCTGATTCAGCCACAGTTC
ATTCTGATTTTTGCCAGCGATGTCTTTTTTCTCAGTTTATTGACCTTGGCCAGTCAGGGTCCAAATGTCCATCTCGGACT
GATTTTTGTTATTACCATTTTTTCAGCCTCATTATTGCTTGATGCCAAGAAAGCCCTGATCGTCACTCTAATTGCGGTGA
TTAGTATTATCTACCAGCATTTTATCGGCAGTATTTTTGCTTTTTCCTCGCTTACCAATATCGGCAACAGTGCCCTGCTG
GCCTTTCTGTTTTTTGTCGTTTATGGCTCGGGGCAAATTGCAGTACGGCGCTTTCAGATTCTGGAAAACCTGAATTTTTC
TCAATCGCTAGAACTATATCGCTTACAGAATATTAACCGCTATATTCTGGAACAGATTGAAACTGGTTATCTGGTCTTAG
ATGAGAATTACCATGTGGTGCTCAGTAATCCGGCTGCCTGTCATCTGCTCGGCATTGAGCCAATGTATGCCCATGAAAGA
TTTTCGTTATACCAATCTCAAAATGACTTATTTGAACTGATCCGTTTTGAAAATCTGGAAAATGGCGAGCGGTTTCAATT
TGAATCCCAGCAGAGTCGTTATAATATTCATGTGCAGGTACAAAAGCTGATTGTGCCGCACCAGACTCTGACTCTCCTCG
TGCTGCAAGATGCCCGCAAACTTAATCAGCAGGTGCAACAGTTAAAGCTTGCTGCTCTAGGCCAGCTTTCCGCCAGTATT
GCCCATGAAATTCGCAATCCTCTGGCTGCCATTGTACAGGCCAATGATCTTTATCTCGATTCTGAACCTGAACAGCAACA
GGTCCTGCATCAGATGATCAGCCGACAGGCTACCCGTATTGACCGGATTATTCAGGACACCCTGAATATGGTGAAGAATA
AAGAAACCCATCCGGTCGTAATTCAGCTGAATGAATTTATACCACTATTTATTCAGGAAGATTTAGCAGATGTGGCCGAC
CAGATTCAATTTAATATTGATGTACCACTGGCTATTCAGTTCGATGAAGCCCAGTTACGTCAGATTCTAATTAACCTGAT
TCGTAATGCTATCCGTCACAATTCTCCAGATTCATCTCATATTCAATTGAATATTCACCCATATGAACATAAGGTATGGA
TAGATGTTCGGGATTTTGGCTCTGGTGTTGCCACCCATGATCAGGAATTATTATTTAAACCTTTTTTCAGCACGTCTATC
CATGGAACGGGACTCGGACTATATTTATCACACAGTTTTTGTGAAGCCAATCAGGCACAACTCAACTACATTTCACAAGA
ACAGGGCGCATGCTTTCGGATTAGTTGTCAACGTGTAACAGCATAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9P740

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

57.822

96.929

0.56