Detailed information NTG0607168

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: LA331_RS03210
• Genome accession: NZ_CP083658
• Coordinates: 652134..653330 (-)
• Length: 398 a.a.
• NCBI ID: WP_005235842.1
• Uniprot ID: -
• Organism: Acinetobacter variabilis strain FDAARGOS_1487
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 647134..658330

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LA331_RS03195 (LA331_03195)	-	649159..650187 (+)	1029	WP_005235838.1	AraC family transcriptional regulator	-
LA331_RS03200 (LA331_03200)	gcvH	650270..650644 (+)	375	WP_004280423.1	glycine cleavage system protein GcvH	-
LA331_RS03205 (LA331_03205)	-	650884..652059 (+)	1176	WP_005235840.1	MFS transporter	-
LA331_RS03210 (LA331_03210)	pilU	652134..653330 (-)	1197	WP_005235842.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
LA331_RS03215 (LA331_03215)	pilU	653731..654909 (-)	1179	WP_005235844.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
LA331_RS03220 (LA331_03220)	-	655170..656219 (-)	1050	WP_005235846.1	3-deoxy-7-phosphoheptulonate synthase	-
LA331_RS03225 (LA331_03225)	-	656771..657301 (-)	531	WP_005235848.1	hypothetical protein	-

Sequence

Protein

• Length: 398 a.a.
• Molecular weight: 44946.45 Da
• Isoelectric Point: 6.5072

>NTDB_id=607168 LA331_RS03210 WP_005235842.1 652134..653330(-) (pilU) [Acinetobacter variabilis strain FDAARGOS_1487]
MFTAELLDEAKKFMHHMLTKVVEYGGSDLFITADFPPSIKHQGLMKPFGQQTLTAEKTKLFAYSLMNDKQRQEFEAELEC
NFAITVPGVSRFRVNVFVQQLQVGMVIRTITAEIPNFQKLKLPESLKHVIMEKRGLVLVVGGTGSGKSTSLAAMIDYRNE
NSAGHIITVEDPVEYVHKHKKSMITHREVGVDCHSWHNALKNTLRQAPDVILIGEIRDTETMEHAIAFAETGHLCLGTLH
SNNANQTLDRIINFFPEERRNQLLMDLSSNMKAIISQRLIRTQDGKGRRAAIEIMLNTPLISDLILKGEFHELKAIMGKS
RELGMQTFDQALFDLYNEGAISYEEALRNADSTNELRLQIKLKSNRQDNPAAGEATQFTMMQEPKAEEKEQENTSASE

Nucleotide

• Length: 1197 bp

>NTDB_id=607168 LA331_RS03210 WP_005235842.1 652134..653330(-) (pilU) [Acinetobacter variabilis strain FDAARGOS_1487]
ATGTTCACGGCAGAACTGTTGGACGAAGCAAAAAAATTCATGCATCACATGCTGACCAAAGTAGTGGAATATGGGGGCTC
AGACTTATTTATTACCGCAGATTTTCCACCGAGTATTAAACACCAGGGCTTAATGAAGCCCTTTGGACAACAGACCTTAA
CTGCTGAAAAAACCAAACTGTTTGCCTATAGCTTGATGAATGACAAACAGCGTCAAGAGTTTGAAGCTGAACTAGAATGT
AACTTCGCGATTACCGTGCCGGGTGTATCGCGCTTCCGAGTAAATGTTTTCGTACAACAGCTTCAGGTTGGGATGGTGAT
CCGGACCATTACGGCAGAAATTCCAAATTTTCAGAAACTGAAATTACCAGAATCATTGAAACACGTGATTATGGAAAAAC
GTGGTCTGGTACTGGTTGTGGGAGGAACAGGTTCAGGTAAATCGACCTCTTTGGCAGCGATGATCGACTACCGCAATGAA
AATTCTGCAGGGCATATTATTACCGTGGAAGACCCAGTGGAATATGTGCATAAGCACAAGAAATCTATGATTACTCACCG
TGAAGTCGGGGTAGATTGCCATTCCTGGCACAATGCGTTGAAAAATACCTTGCGTCAGGCACCTGATGTGATTCTGATTG
GTGAGATTCGCGATACTGAAACCATGGAACACGCAATTGCCTTCGCCGAAACCGGACATTTATGTCTGGGCACACTGCAT
TCCAATAATGCTAACCAGACTTTGGACCGGATTATTAACTTCTTCCCGGAAGAACGCCGTAATCAGTTATTGATGGATCT
ATCTTCGAATATGAAGGCAATTATTTCCCAGCGTCTGATTCGTACTCAGGATGGGAAAGGCCGTCGGGCTGCGATTGAAA
TCATGTTAAATACACCTTTGATTTCTGATCTGATTTTAAAAGGTGAGTTTCATGAGCTGAAAGCTATTATGGGCAAATCT
CGTGAACTGGGCATGCAGACTTTCGATCAGGCCTTATTTGACCTGTATAACGAGGGTGCGATTTCTTATGAGGAAGCATT
GCGTAATGCCGATTCGACTAATGAATTACGTTTACAGATCAAGCTGAAAAGCAACCGCCAAGATAATCCTGCTGCCGGAG
AAGCAACACAATTCACGATGATGCAAGAACCGAAAGCTGAAGAAAAAGAACAAGAAAATACTTCAGCATCTGAATAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (117-282)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	60.92	87.437	0.533
pilU	Acinetobacter baylyi ADP1	55.908	87.186	0.487
pilU	Vibrio cholerae strain A1552	51.781	91.709	0.475
pilT	Pseudomonas aeruginosa PAK	44.172	81.91	0.362
pilT	Acinetobacter nosocomialis M2	43.636	82.915	0.362
pilT	Acinetobacter baumannii D1279779	43.636	82.915	0.362
pilT	Acinetobacter baumannii strain A118	43.636	82.915	0.362