Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   LA331_RS00765 Genome accession   NZ_CP083658
Coordinates   161356..162063 (+) Length   235 a.a.
NCBI ID   WP_005235028.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain FDAARGOS_1487     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 156356..167063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA331_RS00750 (LA331_00750) - 157214..159451 (+) 2238 WP_005235022.1 NADP-dependent isocitrate dehydrogenase -
  LA331_RS00755 (LA331_00755) - 159699..160742 (+) 1044 WP_005235025.1 metallophosphoesterase -
  LA331_RS00760 (LA331_00760) - 160786..161208 (-) 423 WP_004782528.1 OsmC family protein -
  LA331_RS00765 (LA331_00765) crp 161356..162063 (+) 708 WP_005235028.1 cAMP-activated global transcriptional regulator CRP Regulator
  LA331_RS00770 (LA331_00770) - 162257..163306 (+) 1050 WP_005235029.1 NADP(H)-dependent aldo-keto reductase -
  LA331_RS00775 (LA331_00775) - 163452..163817 (+) 366 WP_005235031.1 MbcA/ParS/Xre antitoxin family protein -
  LA331_RS00780 (LA331_00780) clpB 164072..166651 (+) 2580 WP_005235032.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26314.04 Da        Isoelectric Point: 4.7380

>NTDB_id=607163 LA331_RS00765 WP_005235028.1 161356..162063(+) (crp) [Acinetobacter variabilis strain FDAARGOS_1487]
MTSNFSQLSTDALSPGQLPVSVKALLKRAYINRYPKRTTIVDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNAGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEITYENFHEISKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEEPEALGAGEFEDE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=607163 LA331_RS00765 WP_005235028.1 161356..162063(+) (crp) [Acinetobacter variabilis strain FDAARGOS_1487]
ATGACTTCAAACTTTTCACAATTAAGCACAGACGCACTTTCGCCGGGGCAACTACCTGTATCAGTGAAAGCGTTATTAAA
ACGTGCATATATCAATCGCTATCCAAAACGTACCACGATCGTGGATGCAGGGTCAGAATCTAAATCTCTGTATTTAATTC
TGAAGGGGTCTGTGTCTATCATTCTTCGTGAAGATGATGAACGTGAGATTGTGGTAGCTTATTTAAATGCGGGAGACTTC
TTTGGGGAAATGGGTCTTTTCGAAGCAAATCCACAGCGTACTGCGGAAGTGCGTACTCGTGATGTCTGTGAAATTGCTGA
AATTACCTATGAAAACTTTCATGAAATTAGCAAACAATATCCAGACCTTAGCTATGCAGTTTTTGCCCAGCTGGTTCGCC
GTCTGAAAAATACCACACGTAAAGTGACTGACCTGGCATTTATTGATGTATCTGGTCGTATTGCGCGTTGTCTGATTGAC
CTGTCATCTCAGCCAGAAGCGATGATCTTGCCAAATGGTCGTCAAATCCGTATTACCCGTCAGGAAATCGGCCGTATTGT
AGGCTGTTCACGTGAAATGGTCGGTCGTGTTCTAAAAACTCTAGAAGAACAGGGCATGATTGAAACCGATGGTAAGGCGA
TTCTGATTTTTGATGCATCGCTGGAAGAACCTGAAGCACTGGGTGCTGGCGAGTTCGAAGACGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

94.619

94.894

0.898
  crp Vibrio cholerae strain A1552

47.716

83.83

0.4
  crp Haemophilus influenzae Rd KW20

47.692

82.979

0.396