Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LA327_RS18275 Genome accession   NZ_CP083622
Coordinates   3725510..3725992 (-) Length   160 a.a.
NCBI ID   WP_003535713.1    Uniprot ID   A0A3E3AIM6
Organism   Thomasclavelia ramosa strain FDAARGOS_1519     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3720510..3730992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA327_RS18250 (LA327_18250) - 3721471..3722394 (-) 924 WP_008792604.1 transketolase family protein -
  LA327_RS18255 (LA327_18255) - 3722396..3723196 (-) 801 WP_008792603.1 transketolase -
  LA327_RS18260 (LA327_18260) deoC 3723247..3723927 (-) 681 WP_008792602.1 deoxyribose-phosphate aldolase -
  LA327_RS18265 (LA327_18265) - 3724131..3724901 (-) 771 WP_003535716.1 DeoR/GlpR family DNA-binding transcription regulator -
  LA327_RS18270 (LA327_18270) rpsR 3725262..3725492 (-) 231 WP_003535715.1 30S ribosomal protein S18 -
  LA327_RS18275 (LA327_18275) ssb 3725510..3725992 (-) 483 WP_003535713.1 single-stranded DNA-binding protein Machinery gene
  LA327_RS18280 (LA327_18280) rpsF 3726008..3726289 (-) 282 WP_003535710.1 30S ribosomal protein S6 -
  LA327_RS18285 (LA327_18285) - 3726424..3727809 (-) 1386 WP_008792600.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  LA327_RS18290 (LA327_18290) ispD 3727810..3728445 (-) 636 WP_003535706.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  LA327_RS18295 (LA327_18295) - 3728614..3729519 (+) 906 WP_050754560.1 Na/Pi cotransporter family protein -
  LA327_RS18300 (LA327_18300) - 3729491..3730069 (+) 579 WP_008792599.1 DedA family protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18680.80 Da        Isoelectric Point: 4.6896

>NTDB_id=606722 LA327_RS18275 WP_003535713.1 3725510..3725992(-) (ssb) [Thomasclavelia ramosa strain FDAARGOS_1519]
MINRVVLVGRMTRDPELRRTPQGDAVTSFTLAVNRNFTSRDGQQQADFINCVVWRKPAENVERYCSKGSLVGVEGRIQTR
SYDNTQGQKVYVVEVICDSVQFLETRAARERQPQPQQQMQQPYQQPQNNDNFYDMKTVELEKEFDNSINTYDIMEDDIQF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=606722 LA327_RS18275 WP_003535713.1 3725510..3725992(-) (ssb) [Thomasclavelia ramosa strain FDAARGOS_1519]
ATGATTAATAGAGTAGTCCTAGTAGGACGAATGACTAGAGATCCTGAACTTAGAAGAACACCACAAGGTGATGCGGTTAC
TTCTTTTACTTTAGCGGTAAATCGTAATTTTACAAGCAGAGATGGTCAACAACAAGCAGATTTTATTAATTGTGTTGTGT
GGCGTAAACCTGCTGAAAATGTTGAGAGATATTGTTCTAAGGGAAGTTTAGTTGGTGTTGAAGGAAGAATCCAAACACGT
AGCTATGACAATACTCAAGGTCAAAAGGTATATGTTGTAGAAGTTATTTGTGATAGTGTGCAATTCTTAGAAACAAGAGC
TGCTCGTGAAAGGCAACCACAGCCACAACAACAAATGCAACAACCGTACCAACAACCACAAAATAATGATAATTTCTATG
ATATGAAAACAGTTGAATTAGAAAAAGAATTTGATAATTCAATTAATACATATGATATCATGGAAGATGATATTCAGTTT
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3E3AIM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

46.199

100

0.494
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.094

66.25

0.431
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.39

73.75

0.394