Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LAU42_RS11705 Genome accession   NZ_CP083608
Coordinates   2190609..2191133 (-) Length   174 a.a.
NCBI ID   WP_224183699.1    Uniprot ID   -
Organism   Macrococcus armenti strain JEK37     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2185609..2196133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAU42_RS11680 (LAU42_11680) xpt 2186819..2187403 (-) 585 WP_224183694.1 xanthine phosphoribosyltransferase -
  LAU42_RS11685 (LAU42_11685) - 2187880..2188854 (+) 975 WP_224183695.1 DUF2382 domain-containing protein -
  LAU42_RS11690 (LAU42_11690) - 2188970..2189584 (+) 615 WP_224183696.1 GNAT family N-acetyltransferase -
  LAU42_RS11695 (LAU42_11695) - 2189581..2190144 (-) 564 WP_224183697.1 YfbU family protein -
  LAU42_RS11700 (LAU42_11700) rpsR 2190335..2190577 (-) 243 WP_224183698.1 30S ribosomal protein S18 -
  LAU42_RS11705 (LAU42_11705) ssbA 2190609..2191133 (-) 525 WP_224183699.1 single-stranded DNA-binding protein Machinery gene
  LAU42_RS11710 (LAU42_11710) rpsF 2191158..2191448 (-) 291 WP_224184816.1 30S ribosomal protein S6 -
  LAU42_RS11715 (LAU42_11715) - 2191585..2191902 (-) 318 WP_224183700.1 hypothetical protein -
  LAU42_RS11720 (LAU42_11720) ychF 2191925..2193025 (-) 1101 WP_224183701.1 redox-regulated ATPase YchF -
  LAU42_RS11725 (LAU42_11725) - 2193044..2193232 (-) 189 WP_224183702.1 DUF951 domain-containing protein -
  LAU42_RS11730 (LAU42_11730) - 2193234..2194121 (-) 888 WP_224183703.1 mechanosensitive ion channel family protein -
  LAU42_RS11735 (LAU42_11735) - 2194122..2194985 (-) 864 WP_224183704.1 ParB/RepB/Spo0J family partition protein -
  LAU42_RS11740 (LAU42_11740) - 2194978..2195739 (-) 762 WP_224183705.1 ParA family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19215.84 Da        Isoelectric Point: 4.9053

>NTDB_id=606595 LAU42_RS11705 WP_224183699.1 2190609..2191133(-) (ssbA) [Macrococcus armenti strain JEK37]
MLNRVVLVGRLTKDPEYRVTTSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLHKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVVCDSVQFLEPKNANQSRSNNPSDDYSSYDQGNYDKGSYGQTQGQNYQAANNQPNTSAPSNNPFAN
ATGPVDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=606595 LAU42_RS11705 WP_224183699.1 2190609..2191133(-) (ssbA) [Macrococcus armenti strain JEK37]
TTGCTTAACCGAGTTGTATTAGTTGGTCGTTTAACGAAAGATCCAGAATACAGAGTCACAACATCAGGTGTGTCAGTCGC
TACATTCACTTTAGCAGTAAATCGTACATTTACGAATGCTCAAGGAGAACGTCAAGCTGATTTTATCAACTGTGTCGTAT
TCCGTAAGCAAGCAGAGAATGTTAATAATTTCCTGCATAAAGGTAGCTTAGCTGGGGTTGACGGCAGATTGCAATCCCGT
AGTTATGATAATCAAGAAGGACGCAGAGTATATGTAACTGAAGTTGTTTGTGATTCAGTTCAATTCCTTGAACCGAAAAA
TGCAAATCAATCACGTTCAAATAACCCGTCTGATGACTATTCAAGTTATGACCAAGGTAACTACGATAAAGGAAGTTACG
GTCAAACTCAAGGTCAGAACTATCAAGCAGCAAATAATCAACCAAATACATCAGCACCATCAAACAACCCGTTTGCAAAT
GCAACAGGGCCAGTAGATATTAGTGATGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.894

100

0.626
  ssb Latilactobacillus sakei subsp. sakei 23K

51.724

100

0.517
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

60.92

0.362