Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LAU43_RS11550 Genome accession   NZ_CP083595
Coordinates   2174992..2175516 (-) Length   174 a.a.
NCBI ID   WP_224183699.1    Uniprot ID   -
Organism   Macrococcus armenti strain 17Msa1131     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2169992..2180516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAU43_RS11525 (LAU43_11525) xpt 2171202..2171786 (-) 585 WP_224183694.1 xanthine phosphoribosyltransferase -
  LAU43_RS11530 (LAU43_11530) - 2172263..2173237 (+) 975 WP_224183695.1 DUF2382 domain-containing protein -
  LAU43_RS11535 (LAU43_11535) - 2173353..2173967 (+) 615 WP_224185455.1 GNAT family N-acetyltransferase -
  LAU43_RS11540 (LAU43_11540) - 2173964..2174527 (-) 564 WP_224183697.1 YfbU family protein -
  LAU43_RS11545 (LAU43_11545) rpsR 2174718..2174960 (-) 243 WP_224183698.1 30S ribosomal protein S18 -
  LAU43_RS11550 (LAU43_11550) ssbA 2174992..2175516 (-) 525 WP_224183699.1 single-stranded DNA-binding protein Machinery gene
  LAU43_RS11555 (LAU43_11555) rpsF 2175541..2175831 (-) 291 WP_224184816.1 30S ribosomal protein S6 -
  LAU43_RS11560 (LAU43_11560) - 2175968..2176285 (-) 318 WP_224183700.1 hypothetical protein -
  LAU43_RS11565 (LAU43_11565) ychF 2176308..2177408 (-) 1101 WP_224185456.1 redox-regulated ATPase YchF -
  LAU43_RS11570 (LAU43_11570) - 2177427..2177615 (-) 189 WP_224183702.1 DUF951 domain-containing protein -
  LAU43_RS11575 (LAU43_11575) - 2177617..2178504 (-) 888 WP_224183703.1 mechanosensitive ion channel family protein -
  LAU43_RS11580 (LAU43_11580) - 2178505..2179368 (-) 864 WP_224185457.1 ParB/RepB/Spo0J family partition protein -
  LAU43_RS11585 (LAU43_11585) - 2179361..2180122 (-) 762 WP_224183705.1 ParA family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19215.84 Da        Isoelectric Point: 4.9053

>NTDB_id=606483 LAU43_RS11550 WP_224183699.1 2174992..2175516(-) (ssbA) [Macrococcus armenti strain 17Msa1131]
MLNRVVLVGRLTKDPEYRVTTSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLHKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVVCDSVQFLEPKNANQSRSNNPSDDYSSYDQGNYDKGSYGQTQGQNYQAANNQPNTSAPSNNPFAN
ATGPVDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=606483 LAU43_RS11550 WP_224183699.1 2174992..2175516(-) (ssbA) [Macrococcus armenti strain 17Msa1131]
TTGCTTAACCGAGTTGTATTAGTTGGTCGTTTAACGAAAGATCCAGAATACAGAGTCACAACATCAGGTGTGTCAGTCGC
TACATTCACTTTAGCAGTAAATCGTACATTTACGAATGCTCAAGGAGAACGTCAAGCTGATTTTATCAACTGTGTCGTAT
TCCGTAAGCAAGCAGAGAATGTTAATAATTTCCTGCATAAAGGTAGCTTAGCTGGGGTTGACGGCAGATTGCAATCCCGT
AGTTATGATAATCAAGAAGGACGCAGAGTATATGTAACTGAAGTTGTTTGTGATTCAGTTCAATTCCTTGAACCGAAAAA
TGCAAATCAATCACGTTCAAATAACCCGTCTGATGACTATTCAAGTTATGACCAAGGTAACTACGATAAAGGAAGTTACG
GTCAAACTCAAGGTCAGAACTATCAAGCAGCAAATAATCAACCAAATACATCAGCACCATCAAACAACCCGTTTGCAAAT
GCAACAGGGCCAGTAGATATTAGTGATGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.894

100

0.626
  ssb Latilactobacillus sakei subsp. sakei 23K

51.724

100

0.517
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

60.92

0.362