Detailed information NTG0606378

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LAZ82_RS01525
• Genome accession: NZ_CP083589
• Coordinates: 329516..330379 (-)
• Length: 287 a.a.
• NCBI ID: WP_234295276.1
• Uniprot ID: -
• Organism: Herbaspirillum frisingense strain AU14559
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 324516..335379

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LAZ82_RS01495 (LAZ82_01495)	argJ	324922..326157 (+)	1236	WP_234295274.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
LAZ82_RS01500 (LAZ82_01500)	-	326346..327221 (+)	876	WP_006713179.1	ATP-binding protein	-
LAZ82_RS01505 (LAZ82_01505)	mutT	327221..327634 (+)	414	WP_102663292.1	8-oxo-dGTP diphosphatase MutT	-
LAZ82_RS01510 (LAZ82_01510)	yacG	327722..327907 (-)	186	WP_034336666.1	DNA gyrase inhibitor YacG	-
LAZ82_RS01515 (LAZ82_01515)	zapD	327937..328692 (-)	756	WP_006713184.1	cell division protein ZapD	-
LAZ82_RS01520 (LAZ82_01520)	coaE	328886..329506 (-)	621	WP_234295275.1	dephospho-CoA kinase	-
LAZ82_RS01525 (LAZ82_01525)	pilD	329516..330379 (-)	864	WP_234295276.1	prepilin peptidase	Machinery gene
LAZ82_RS01530 (LAZ82_01530)	-	330460..331701 (-)	1242	WP_234295277.1	type II secretion system F family protein	-
LAZ82_RS01535 (LAZ82_01535)	pilF	331688..332833 (-)	1146	WP_411909976.1	GspE/PulE family protein	Machinery gene
LAZ82_RS01540 (LAZ82_01540)	-	332946..334241 (-)	1296	WP_234295279.1	HlyC/CorC family transporter	-
LAZ82_RS01545 (LAZ82_01545)	-	334356..335354 (-)	999	WP_326491462.1	glyoxylate/hydroxypyruvate reductase A	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 31072.28 Da
• Isoelectric Point: 8.0059

>NTDB_id=606378 LAZ82_RS01525 WP_234295276.1 329516..330379(-) (pilD) [Herbaspirillum frisingense strain AU14559]
MHFLEAYALPGNPALAGLAALLGLLVGSFLNVVIHRLPIMMLRETANFVAMERGEALPHQDRYDLWLPHSACPHCARPLA
PWHKLPVLSWLLLRGRCSFCQARISARYPLVELLTALLFALVAWRFGLGATGLAVMLCSTFLIALAFIDADTMLLPDDLT
LPLLWLGLLVNLNHRLVALPDAVLGAAAGYGVLWLIFWIFKLATGKDGLGYGDFKLMAALGAWLGWQALPLVLLLASVMG
ALLGLALMVGGRHQRGQAIPFGPCLAGAGLLALLLDGTWLNLTHFAY

Nucleotide

• Length: 864 bp

>NTDB_id=606378 LAZ82_RS01525 WP_234295276.1 329516..330379(-) (pilD) [Herbaspirillum frisingense strain AU14559]
ATGCATTTCCTGGAAGCCTACGCCCTCCCCGGCAATCCCGCCCTGGCCGGTCTGGCGGCCCTGCTGGGCCTGCTGGTGGG
CAGCTTCCTGAACGTGGTGATCCACCGCCTGCCCATCATGATGCTGCGCGAGACCGCCAATTTTGTGGCGATGGAGCGCG
GCGAAGCCCTGCCGCATCAGGATCGCTACGACCTCTGGCTGCCCCATTCCGCCTGCCCGCACTGCGCCCGGCCGCTGGCG
CCGTGGCACAAGCTGCCGGTGCTGAGCTGGCTACTGCTGCGCGGCCGCTGTAGTTTTTGCCAGGCCAGGATCAGCGCGCG
CTATCCGCTGGTGGAGCTGCTGACCGCGCTCCTGTTCGCTCTGGTGGCCTGGCGCTTCGGACTGGGTGCCACCGGGCTGG
CCGTCATGCTCTGCAGCACCTTCCTGATTGCGCTCGCCTTCATCGATGCCGACACCATGCTGCTGCCCGATGACCTGACC
CTGCCGCTGCTATGGCTGGGGCTGCTGGTGAACCTGAACCATCGCCTGGTGGCGCTGCCCGATGCAGTGCTGGGCGCGGC
CGCCGGCTATGGCGTGCTGTGGCTGATCTTCTGGATCTTCAAGCTGGCCACCGGCAAGGATGGCCTGGGCTATGGCGACT
TCAAGCTCATGGCCGCCCTGGGCGCCTGGCTGGGTTGGCAGGCGCTGCCGCTGGTGCTGCTGCTGGCCTCGGTGATGGGC
GCCCTGCTGGGCCTGGCGCTGATGGTCGGCGGGCGCCACCAGCGCGGCCAGGCCATTCCATTCGGCCCCTGCCTGGCCGG
CGCCGGCCTGCTGGCCCTGCTGCTGGATGGCACCTGGCTGAACCTGACTCACTTCGCTTACTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55	90.592	0.498
pilD	Vibrio campbellii strain DS40M4	48.699	93.728	0.456
pilD	Neisseria gonorrhoeae MS11	50	90.592	0.453
pilD	Acinetobacter baumannii D1279779	43.478	96.167	0.418
pilD	Acinetobacter nosocomialis M2	43.478	96.167	0.418