Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   K9N68_RS20785 Genome accession   NZ_CP083582
Coordinates   4419420..4419797 (-) Length   125 a.a.
NCBI ID   WP_224340276.1    Uniprot ID   -
Organism   Kovacikia minuta CCNUW1 strain CCNU0001     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4414420..4424797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N68_RS20755 (K9N68_20755) - 4414902..4415042 (+) 141 WP_224340270.1 hypothetical protein -
  K9N68_RS20760 (K9N68_20760) - 4415236..4415499 (+) 264 WP_224340271.1 hypothetical protein -
  K9N68_RS20765 (K9N68_20765) - 4415602..4415784 (+) 183 WP_224340272.1 DUF4278 domain-containing protein -
  K9N68_RS20770 (K9N68_20770) - 4416117..4416758 (-) 642 WP_224340273.1 Uma2 family endonuclease -
  K9N68_RS20775 (K9N68_20775) - 4416869..4417576 (-) 708 WP_224340274.1 Uma2 family endonuclease -
  K9N68_RS20780 (K9N68_20780) - 4417614..4419254 (-) 1641 WP_224340275.1 deoxyribodipyrimidine photo-lyase -
  K9N68_RS20785 (K9N68_20785) pilH 4419420..4419797 (-) 378 WP_224340276.1 response regulator transcription factor Machinery gene
  K9N68_RS20790 (K9N68_20790) - 4420120..4421073 (-) 954 WP_254721651.1 aldo/keto reductase -
  K9N68_RS20795 (K9N68_20795) - 4421413..4422840 (+) 1428 WP_224340278.1 BCD family MFS transporter -
  K9N68_RS20800 (K9N68_20800) - 4422958..4423764 (+) 807 WP_224340279.1 inositol monophosphatase family protein -
  K9N68_RS20805 (K9N68_20805) - 4424000..4424518 (+) 519 WP_224340280.1 inorganic diphosphatase -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14047.21 Da        Isoelectric Point: 5.7736

>NTDB_id=606344 K9N68_RS20785 WP_224340276.1 4419420..4419797(-) (pilH) [Kovacikia minuta CCNUW1 strain CCNU0001]
MSTVLIVDDSPTVRELLSEQLKRSGFSVVEAVDGEEAIEKIKANVPDLVVTDIVMPRKNGYELCRWIKNDAQAKHVPVVM
CTSKSEEFDVYWGMKQGADAYITKPYHPPDLLDAVKRLLRDAKKG

Nucleotide


Download         Length: 378 bp        

>NTDB_id=606344 K9N68_RS20785 WP_224340276.1 4419420..4419797(-) (pilH) [Kovacikia minuta CCNUW1 strain CCNU0001]
ATGAGTACAGTTCTAATTGTTGACGATAGCCCAACTGTACGAGAACTCCTCTCGGAACAGTTAAAACGAAGTGGCTTTAG
TGTGGTCGAGGCAGTCGATGGCGAAGAAGCGATCGAAAAGATTAAGGCAAACGTCCCAGATTTGGTTGTAACCGATATCG
TCATGCCCCGAAAAAATGGGTATGAACTCTGCCGCTGGATTAAAAATGACGCCCAGGCAAAACACGTTCCTGTCGTCATG
TGTACCAGCAAGAGCGAAGAATTTGATGTCTATTGGGGCATGAAGCAGGGAGCAGACGCCTACATCACAAAACCGTACCA
TCCCCCAGATTTGCTGGATGCAGTAAAGCGCCTGTTAAGGGACGCGAAGAAAGGATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

57.851

96.8

0.56
  pilL-C Synechocystis sp. PCC 6803

49.153

94.4

0.464
  pilG Acinetobacter baumannii strain A118

43.363

90.4

0.392