Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ABEDC_RS09695 Genome accession   NZ_CP083571
Coordinates   2005054..2005761 (-) Length   235 a.a.
NCBI ID   WP_004280141.1    Uniprot ID   A0A2K8USH5
Organism   Acinetobacter lwoffii strain ED9-5a     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2000054..2010761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEDC_RS09685 (ABEDC_2015) clpB 2001004..2003583 (-) 2580 WP_374952075.1 ATP-dependent chaperone ClpB -
  ABEDC_RS09690 (ABEDC_2016) - 2003831..2004880 (-) 1050 WP_374952076.1 NADP(H)-dependent aldo-keto reductase -
  ABEDC_RS09695 (ABEDC_2017) crp 2005054..2005761 (-) 708 WP_004280141.1 cAMP-activated global transcriptional regulator CRP Regulator
  ABEDC_RS09700 (ABEDC_2018) - 2005909..2006331 (+) 423 WP_374952077.1 OsmC family protein -
  ABEDC_RS09705 (ABEDC_2019) - 2006398..2007435 (-) 1038 WP_005096522.1 metallophosphoesterase -
  ABEDC_RS09710 - 2007655..2008185 (+) 531 Protein_1869 transposase -
  ABEDC_RS09715 (ABEDC_2022) - 2008354..2009136 (-) 783 WP_374952078.1 sulfite exporter TauE/SafE family protein -
  ABEDC_RS09720 (ABEDC_2023) - 2009205..2010077 (-) 873 WP_348962245.1 MBL fold metallo-hydrolase -
  ABEDC_RS09725 (ABEDC_2024) - 2010080..2010496 (-) 417 WP_005404969.1 DUF6691 family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26255.96 Da        Isoelectric Point: 4.7275

>NTDB_id=606238 ABEDC_RS09695 WP_004280141.1 2005054..2005761(-) (crp) [Acinetobacter lwoffii strain ED9-5a]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIIDAGSESKSLYLILKGSVSIILREDDDREIVVAYLNAGDF
FGEMGLFEVNPQRTAEVRTRDVCEIAEITYENFHEISKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEEASEAVADGAIDE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=606238 ABEDC_RS09695 WP_004280141.1 2005054..2005761(-) (crp) [Acinetobacter lwoffii strain ED9-5a]
ATGACTTCAAACTTTTCACAATTAAGCACTGATGCGCTTTCTCCGGGGCAATTACCAGAATCCGTGAAAGCACTGTTAAA
ACGTGCATATATTAATCGTTATCCAAAACGTACCACGATCATTGATGCAGGATCAGAATCTAAATCTTTATATTTAATTC
TGAAGGGGTCTGTATCTATCATTCTTCGTGAAGATGATGATCGTGAAATTGTCGTGGCTTATTTAAATGCGGGTGACTTC
TTTGGGGAAATGGGTCTATTCGAGGTTAATCCACAACGTACTGCGGAAGTTCGTACGCGTGATGTGTGTGAAATTGCCGA
AATTACCTATGAAAACTTTCACGAAATCAGCAAGCAATATCCTGATCTGAGCTATGCGGTATTTGCTCAATTAGTACGTC
GTTTGAAAAATACCACACGTAAAGTCACTGATCTGGCATTTATTGATGTTTCAGGCCGGATTGCACGTTGTCTGATCGAC
CTGTCTTCACAGCCAGAAGCGATGATTTTGCCGAATGGCCGTCAGATTCGTATTACCCGTCAGGAAATTGGTCGCATTGT
TGGCTGTTCCCGCGAAATGGTCGGACGTGTACTAAAAACCCTGGAAGAGCAGGGCATGATCGAAACCGATGGTAAAGCCA
TCCTGATCTTTGATGCTTCATTAGAAGAAGCATCTGAAGCAGTGGCAGATGGTGCCATAGACGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K8USH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.064

100

0.911
  crp Vibrio cholerae strain A1552

47.317

87.234

0.413
  crp Haemophilus influenzae Rd KW20

48.205

82.979

0.4