Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ABEDC_RS03475 Genome accession   NZ_CP083571
Coordinates   719694..720077 (+) Length   127 a.a.
NCBI ID   WP_004280711.1    Uniprot ID   A0AAJ3AH21
Organism   Acinetobacter lwoffii strain ED9-5a     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 714694..725077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEDC_RS03465 (ABEDC_0721) - 717581..718708 (-) 1128 WP_374952509.1 efflux RND transporter periplasmic adaptor subunit -
  ABEDC_RS03470 (ABEDC_0722) - 718760..719407 (-) 648 WP_374952510.1 hypothetical protein -
  ABEDC_RS03475 (ABEDC_0723) pilG 719694..720077 (+) 384 WP_004280711.1 twitching motility response regulator PilG Regulator
  ABEDC_RS03480 (ABEDC_0724) - 720102..720470 (+) 369 WP_004280710.1 response regulator -
  ABEDC_RS03485 (ABEDC_0725) - 720476..721012 (+) 537 WP_004280709.1 chemotaxis protein CheW -
  ABEDC_RS03490 (ABEDC_0726) - 721059..723131 (+) 2073 WP_004645841.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14315.39 Da        Isoelectric Point: 4.7172

>NTDB_id=606230 ABEDC_RS03475 WP_004280711.1 719694..720077(+) (pilG) [Acinetobacter lwoffii strain ED9-5a]
MDDKFQNLKIMVIDDSKTIRRTAETLLQREGYEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHISA

Nucleotide


Download         Length: 384 bp        

>NTDB_id=606230 ABEDC_RS03475 WP_004280711.1 719694..720077(+) (pilG) [Acinetobacter lwoffii strain ED9-5a]
ATGGACGATAAATTCCAAAATCTAAAAATTATGGTTATTGATGACTCAAAGACCATTCGTCGTACTGCGGAAACTCTTCT
TCAACGCGAAGGTTATGAGGTCATTACTGCAGTAGACGGTTTTGAGGCTTTGTCAAAAATTGCCGAAGCAAATCCAGATA
TCGTTTTTGTAGATATTATGATGCCGCGCCTGGATGGTTACCAAACCTGCGCCTTAATCAAAAACTCTCAGAATTACCAG
AATATTCCTGTGATTATGCTATCGAGTAAAGATGGCTTATTTGATCAGGCCAAAGGTCGTGTCGTGGGTTCAGATGAATA
CCTGACTAAACCTTTTAGTAAAGATGAATTGCTCAATGCAATCCGTAACCATATTAGTGCTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

95.276

100

0.953
  vicR Streptococcus mutans UA159

45.299

92.126

0.417
  pilH Synechocystis sp. PCC 6803

40.708

88.976

0.362