Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABEDC_RS01135 Genome accession   NZ_CP083571
Coordinates   245355..246779 (-) Length   474 a.a.
NCBI ID   WP_374952411.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED9-5a     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 240355..251779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEDC_RS01120 (ABEDC_0231) lptG 241408..242478 (+) 1071 WP_004281054.1 LPS export ABC transporter permease LptG -
  ABEDC_RS01125 (ABEDC_0232) gpmI 242603..244150 (+) 1548 WP_374952410.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ABEDC_RS01130 (ABEDC_0233) - 244182..245354 (+) 1173 WP_262466452.1 S41 family peptidase -
  ABEDC_RS01135 (ABEDC_0234) pilR 245355..246779 (-) 1425 WP_374952411.1 sigma-54-dependent transcriptional regulator Regulator
  ABEDC_RS01140 (ABEDC_0235) pilS 246794..248359 (-) 1566 WP_336018036.1 PAS domain-containing sensor histidine kinase Regulator
  ABEDC_RS01145 (ABEDC_0236) - 248382..249017 (-) 636 WP_004281059.1 response regulator -
  ABEDC_RS01150 (ABEDC_0237) - 249237..250298 (+) 1062 WP_191112161.1 serine hydrolase -
  ABEDC_RS01155 (ABEDC_0238) - 250322..251185 (-) 864 WP_004729973.1 IS982 family transposase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 53583.80 Da        Isoelectric Point: 6.0366

>NTDB_id=606217 ABEDC_RS01135 WP_374952411.1 245355..246779(-) (pilR) [Acinetobacter lwoffii strain ED9-5a]
MNGEQQPLVLLVDDEEDLCTLMQMSLLRMGIRTHIAHRLEDAKKCLANHQYDACLTDLNLPDGNGLELLDWIGNLYPTLP
VAVLTAYGNMEIAIAALKAGAFDFVSKPINQKHLEQLLQKALNKPVDYSHNNPNDALEHKMLIGQSMPIQQLRITLQKIA
RSQAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHKKGSFTGAAQDKQGLIQSAHGGSLFL
DEIAELPLSMQVKLLRAVQEKRIRPLGSDTEIDVDFRVISATHQDLEALVQQGKFRQDLYFRIHVMDLTLPPLRERGQDI
LLLAEHFMQKICQEWGIPNKKLTERSKEFLLGQYYPGNVRELRNIMERAITLSDEERIDLQHLQSAPLRQALNSPQEMNT
LTSEIIATEILIAPKKLPEEGLELYLEKVEKEILLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEEDE

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=606217 ABEDC_RS01135 WP_374952411.1 245355..246779(-) (pilR) [Acinetobacter lwoffii strain ED9-5a]
ATGAATGGGGAACAACAACCACTGGTGCTCTTGGTGGATGATGAGGAGGATTTATGTACCCTCATGCAAATGTCATTGCT
GCGCATGGGAATTCGCACGCACATTGCCCATCGTTTGGAAGACGCTAAAAAATGCCTTGCCAATCATCAATATGATGCCT
GTCTGACCGACCTGAATCTGCCCGATGGCAATGGTTTGGAGTTACTGGATTGGATTGGCAATCTTTACCCGACACTTCCG
GTCGCGGTTCTGACCGCCTATGGCAATATGGAAATCGCCATTGCTGCGCTCAAAGCAGGGGCTTTTGACTTTGTCAGCAA
ACCGATTAATCAAAAACACCTAGAGCAGCTCTTACAAAAAGCGCTGAATAAACCGGTGGATTATTCGCATAATAATCCGA
ACGATGCACTCGAACATAAAATGCTGATTGGACAATCCATGCCAATTCAGCAATTACGCATTACCTTACAAAAAATTGCC
CGATCCCAGGCACCAGTTTTTATCACAGGGGAATCAGGCACAGGCAAGGAAGTCGTGGCCAATCTGGTACATCGCCTGAG
TAACCGCAACGAAGGTCCTTTTATTGCGATTAACTGTGGCGCCATTCCGACTGAGTTGATGGAAAGTGAACTCTTTGGAC
ATAAAAAAGGCAGCTTTACCGGCGCTGCTCAGGACAAACAGGGCCTGATTCAATCTGCCCATGGTGGCAGCCTGTTTTTG
GATGAAATTGCAGAATTACCGCTTTCCATGCAGGTCAAACTGTTACGTGCCGTACAGGAAAAACGTATTCGTCCACTCGG
TTCAGATACCGAAATTGATGTGGATTTCCGTGTAATCAGTGCCACCCATCAGGATCTGGAAGCCTTGGTGCAACAAGGCA
AATTCCGTCAGGATTTATATTTCCGTATTCATGTAATGGATCTGACTTTACCGCCGCTGCGTGAACGCGGCCAGGATATT
CTGTTACTGGCTGAACACTTTATGCAGAAGATTTGTCAGGAATGGGGAATTCCCAATAAAAAACTGACCGAACGCAGTAA
AGAGTTCTTATTGGGACAATATTATCCAGGTAATGTACGTGAATTGCGTAATATTATGGAACGCGCGATTACTTTAAGTG
ATGAAGAGCGGATTGATCTTCAGCATTTACAGAGTGCACCGCTACGTCAGGCGCTAAACAGCCCTCAGGAGATGAATACG
CTCACGAGCGAGATCATTGCGACCGAAATCCTGATTGCACCTAAAAAGCTGCCTGAAGAGGGCTTAGAGCTGTATTTGGA
AAAGGTCGAGAAAGAGATTTTACTGAATGCGCTGAATCTGACCCACTGGAACCGGACACTGGCCGCCAAAAAACTCGGCA
TGTCGTTCCGTTCCCTGCGCTACCGCTTGAAAAAGTTCGGACTGGATACCGAAGAAGACGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(426-466)

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(142-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

73.84

100

0.738
  pilR Pseudomonas aeruginosa PAK

49.241

97.257

0.479