Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABEDC_RS01140 Genome accession   NZ_CP083571
Coordinates   246794..248359 (-) Length   521 a.a.
NCBI ID   WP_336018036.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED9-5a     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 241794..253359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEDC_RS01125 (ABEDC_0232) gpmI 242603..244150 (+) 1548 WP_374952410.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ABEDC_RS01130 (ABEDC_0233) - 244182..245354 (+) 1173 WP_262466452.1 S41 family peptidase -
  ABEDC_RS01135 (ABEDC_0234) pilR 245355..246779 (-) 1425 WP_374952411.1 sigma-54-dependent transcriptional regulator Regulator
  ABEDC_RS01140 (ABEDC_0235) pilS 246794..248359 (-) 1566 WP_336018036.1 PAS domain-containing sensor histidine kinase Regulator
  ABEDC_RS01145 (ABEDC_0236) - 248382..249017 (-) 636 WP_004281059.1 response regulator -
  ABEDC_RS01150 (ABEDC_0237) - 249237..250298 (+) 1062 WP_191112161.1 serine hydrolase -
  ABEDC_RS01155 (ABEDC_0238) - 250322..251185 (-) 864 WP_004729973.1 IS982 family transposase -
  ABEDC_RS01160 (ABEDC_0239) thrC 251340..252479 (-) 1140 WP_374952412.1 threonine synthase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59464.65 Da        Isoelectric Point: 6.3545

>NTDB_id=606218 ABEDC_RS01140 WP_336018036.1 246794..248359(-) (pilS) [Acinetobacter lwoffii strain ED9-5a]
MAQKSSYSALNQYHLGIWYSAYRLLISTGLLLIFLLTYPELTTDYQYPQLYYYALGIGVAINTVQLFALKWIRRLIQPQL
IMIFFSDVCVLSLLTLASDGPNLQIGLLFVITIFSASLLLDAKKALVVTLIAVISVIYQHFIGSIFAFSSLSNISNSALL
AFLFFVVYGTGQIAIRRFQILENLNFSQSLELHRLQNINRYILEQIETGYLVLDENYHVVLSNPAACNLLGIESKYGHEK
FTLSQSQPDLFELIHFETLENGERFQFESQQSRYNIHVQVQKLIVPHQTLMLLVLQDAKKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLYLDSETEQQQLLQQMIGRQATRIDRIIQDTLNMVKNKETHPIPIHLNDFIPLFIQEDLADIHD
QIQFNIDIPLVIQFDEAQFRQILINLIRNAIRHNSADAAYIQLNVHPYEHRVWIDVRDFGSGVAVHDQALLFKPFFSTSI
SGTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISCQRITL

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=606218 ABEDC_RS01140 WP_336018036.1 246794..248359(-) (pilS) [Acinetobacter lwoffii strain ED9-5a]
ATGGCACAAAAATCCAGTTATTCTGCGCTCAATCAATATCATCTCGGTATCTGGTATAGCGCTTATCGCTTGCTGATCAG
CACCGGCCTACTGCTGATTTTTCTGCTGACCTACCCCGAACTCACCACCGATTATCAATATCCGCAGCTGTATTATTATG
CGCTAGGAATCGGGGTTGCGATCAATACCGTACAGCTGTTTGCGCTGAAATGGATCAGACGACTGATCCAGCCGCAGCTG
ATCATGATTTTCTTTAGCGATGTCTGCGTTCTAAGTTTGCTGACTTTGGCGAGCGACGGTCCTAATCTGCAAATCGGGTT
GCTGTTTGTGATTACCATCTTTTCTGCATCTTTATTATTAGATGCAAAAAAGGCCTTAGTCGTCACCCTCATTGCGGTCA
TCAGTGTTATTTATCAGCATTTTATCGGCAGTATTTTTGCGTTTTCTTCCTTAAGCAATATCAGTAATAGCGCCTTGCTG
GCCTTTTTATTTTTTGTGGTCTATGGCACTGGGCAGATCGCCATACGCCGTTTTCAGATTCTGGAAAATCTAAATTTTTC
TCAATCGCTGGAACTGCATCGCTTACAGAATATTAACCGCTATATTCTGGAGCAGATTGAAACCGGCTATCTGGTTCTGG
ATGAAAACTACCATGTGGTACTCAGTAATCCTGCCGCCTGTAATCTTCTTGGAATTGAGTCCAAATACGGCCATGAGAAA
TTCACTTTATCTCAGTCACAGCCAGATTTATTTGAACTGATCCATTTTGAGACACTGGAAAATGGTGAGCGCTTTCAGTT
TGAATCTCAGCAAAGTCGCTATAATATTCATGTGCAGGTGCAAAAACTGATTGTGCCACATCAGACTCTAATGCTACTGG
TGTTACAGGATGCCAAAAAACTGAATCAGCAGGTGCAGCAACTTAAACTTGCTGCACTGGGTCAACTCTCGGCCAGTATT
GCCCATGAAATTCGCAACCCCCTAGCTGCCATTGTGCAAGCCAATGATTTATATCTGGACTCGGAAACTGAACAGCAACA
GCTACTCCAGCAGATGATTGGCCGACAGGCGACCCGGATTGACCGGATTATTCAGGACACGCTGAATATGGTCAAAAATA
AAGAAACCCATCCTATACCGATTCATCTCAATGATTTTATCCCGTTATTTATCCAAGAAGATCTGGCCGATATTCATGAT
CAGATTCAATTTAATATTGATATCCCTTTGGTCATTCAGTTTGATGAAGCACAATTCCGGCAAATCCTCATTAATCTGAT
TCGTAATGCCATTCGTCACAATTCAGCAGATGCAGCCTATATTCAGCTGAATGTGCATCCCTATGAACATCGGGTCTGGA
TTGATGTACGGGATTTTGGCTCTGGCGTAGCCGTACATGATCAGGCCTTATTGTTTAAACCCTTTTTTAGTACATCGATT
AGTGGTACCGGATTAGGATTGTATTTATCACATAGTTTTTGCGAAGCAAATCAGGCACAATTAAACTATATACAACAAGA
ACAGGGCGCATGCTTTCGCATCAGCTGTCAACGTATTACGCTTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

56.832

96.929

0.551