Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   NLL86_RS18260 Genome accession   NZ_CP100660
Coordinates   4003724..4004392 (-) Length   222 a.a.
NCBI ID   WP_254480648.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain ZL22     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3998724..4009392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLL86_RS18245 (NLL86_18245) - 4000279..4001145 (+) 867 WP_254480645.1 LysR family transcriptional regulator -
  NLL86_RS18250 (NLL86_18250) - 4001119..4002276 (-) 1158 WP_254480646.1 HPP family protein -
  NLL86_RS18255 (NLL86_18255) - 4002408..4003727 (-) 1320 WP_254480647.1 sensor histidine kinase -
  NLL86_RS18260 (NLL86_18260) ciaR 4003724..4004392 (-) 669 WP_254480648.1 response regulator transcription factor Regulator
  NLL86_RS18265 (NLL86_18265) - 4004394..4004708 (-) 315 WP_254480649.1 PepSY domain-containing protein -
  NLL86_RS18270 (NLL86_18270) - 4004708..4005016 (-) 309 WP_254480650.1 PepSY domain-containing protein -
  NLL86_RS18275 (NLL86_18275) - 4005169..4006248 (+) 1080 WP_254480651.1 patatin-like phospholipase family protein -
  NLL86_RS18280 (NLL86_18280) queD 4006302..4006658 (+) 357 WP_003250327.1 6-carboxytetrahydropterin synthase QueD -
  NLL86_RS18285 (NLL86_18285) - 4006694..4007344 (-) 651 WP_254480652.1 hypothetical protein -
  NLL86_RS18290 (NLL86_18290) - 4007418..4007885 (-) 468 WP_254480653.1 DUF1289 domain-containing protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24775.14 Da        Isoelectric Point: 5.6285

>NTDB_id=606063 NLL86_RS18260 WP_254480648.1 4003724..4004392(-) (ciaR) [Pseudomonas fluorescens strain ZL22]
MRLLLVEDNVPLADELTTSLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGLEVLAQWRAGGLATPVLILTA
RGSWAERIEGLKTGADDYLSKPFHPEELQLRIQALLRRARGLANQPTLEAAGLQLDESRQCVSRDGVDIQLTAAEFRLLR
YFMLHPQQILSKSHLAEHLYDGETERDSNVLEVHVNHLRRKLGRSVIETRRGQGYIYAGSAG

Nucleotide


Download         Length: 669 bp        

>NTDB_id=606063 NLL86_RS18260 WP_254480648.1 4003724..4004392(-) (ciaR) [Pseudomonas fluorescens strain ZL22]
ATGCGCTTGCTGCTTGTCGAAGACAATGTGCCCCTGGCCGACGAACTGACCACCAGCCTGCAACGCCAGGGCTACGCCGT
GGACTGGCTGGCCGATGGCCGCGATGCGGTGTACCAGGGCCAGAGCGAACCCTATGACCTGATCATCCTCGACCTCGGCT
TGCCGGGCTTGCCGGGCCTGGAGGTGCTTGCGCAATGGCGTGCCGGCGGCCTGGCCACGCCGGTGCTGATCCTCACGGCG
CGCGGGTCGTGGGCGGAACGTATCGAAGGCTTGAAGACCGGGGCGGACGACTACCTGAGCAAGCCCTTCCACCCCGAGGA
GTTGCAGCTGCGCATCCAGGCCCTGCTGCGCCGCGCCCGCGGCCTGGCCAACCAGCCAACGCTGGAAGCTGCAGGCCTGC
AACTGGATGAAAGCCGCCAGTGCGTGAGCCGCGATGGCGTCGACATCCAGCTCACCGCTGCGGAGTTTCGCCTGTTGCGC
TACTTCATGCTGCACCCCCAGCAGATCCTGTCCAAGAGCCACCTGGCCGAGCACCTTTACGACGGCGAGACCGAGCGCGA
TTCCAATGTGCTGGAAGTGCACGTCAACCACCTGCGGCGCAAGCTGGGTCGCAGCGTCATCGAGACCCGTCGCGGGCAAG
GCTATATCTATGCCGGGAGCGCCGGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

37.727

99.099

0.374
  ciaR Streptococcus pneumoniae Rx1

37.273

99.099

0.369
  ciaR Streptococcus pneumoniae D39

37.273

99.099

0.369
  ciaR Streptococcus pneumoniae R6

37.273

99.099

0.369
  ciaR Streptococcus pneumoniae TIGR4

37.273

99.099

0.369