Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   NLZ06_RS03425 Genome accession   NZ_CP100544
Coordinates   699858..700517 (-) Length   219 a.a.
NCBI ID   WP_001221502.1    Uniprot ID   B7LGG8
Organism   Escherichia coli strain LH09-a     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 694858..705517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLZ06_RS03400 (NLZ06_03400) parE 694949..696841 (+) 1893 WP_000195296.1 DNA topoisomerase IV subunit B -
  NLZ06_RS03405 (NLZ06_03405) ygiN 696889..697203 (-) 315 WP_000958598.1 putative quinol monooxygenase -
  NLZ06_RS03410 (NLZ06_03410) mdaB 697234..697815 (-) 582 WP_000065430.1 NADPH:quinone oxidoreductase MdaB -
  NLZ06_RS03415 (NLZ06_03415) ygiZ 698134..698466 (+) 333 WP_000912120.1 DUF2645 family protein -
  NLZ06_RS03420 (NLZ06_03420) qseC 698512..699861 (-) 1350 WP_000673354.1 quorum sensing histidine kinase QseC -
  NLZ06_RS03425 (NLZ06_03425) ciaR 699858..700517 (-) 660 WP_001221502.1 quorum sensing response regulator transcription factor QseB Regulator
  NLZ06_RS03430 (NLZ06_03430) ygiW 700669..701061 (+) 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
  NLZ06_RS03435 (NLZ06_03435) ygiV 701114..701596 (+) 483 WP_000183494.1 GyrI-like domain-containing protein -
  NLZ06_RS03440 (NLZ06_03440) parC 702142..704400 (+) 2259 WP_047653762.1 DNA topoisomerase IV subunit A -
  NLZ06_RS03445 (NLZ06_03445) plsC 704634..705371 (+) 738 WP_000965712.1 1-acylglycerol-3-phosphate O-acyltransferase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24745.66 Da        Isoelectric Point: 6.6543

>NTDB_id=605841 NLZ06_RS03425 WP_001221502.1 699858..700517(-) (ciaR) [Escherichia coli strain LH09-a]
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=605841 NLZ06_RS03425 WP_001221502.1 699858..700517(-) (ciaR) [Escherichia coli strain LH09-a]
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTTTATAGCGCGCCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGCTGGAGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7LGG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.326

100

0.397
  ciaR Streptococcus pneumoniae D39

38.326

100

0.397
  ciaR Streptococcus pneumoniae R6

38.326

100

0.397
  ciaR Streptococcus pneumoniae TIGR4

38.326

100

0.397
  ciaR Streptococcus mutans UA159

35.874

100

0.365