Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   K9864_RS18505 Genome accession   NZ_CP083436
Coordinates   3686274..3686963 (-) Length   229 a.a.
NCBI ID   WP_111927758.1    Uniprot ID   -
Organism   Bacillus velezensis strain HC-8     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3681274..3691963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9864_RS18470 (K9864_18355) - 3681472..3681954 (-) 483 WP_003151394.1 flagellar protein FlgN -
  K9864_RS18475 (K9864_18360) flgM 3681969..3682235 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  K9864_RS18480 (K9864_18365) - 3682305..3682724 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  K9864_RS18485 (K9864_18370) comFC 3682798..3683487 (-) 690 WP_197535984.1 ComF family protein Machinery gene
  K9864_RS18490 (K9864_18375) - 3683493..3683777 (-) 285 WP_014419011.1 late competence development ComFB family protein -
  K9864_RS18495 (K9864_18380) comFA 3683835..3685220 (-) 1386 WP_014419012.1 DEAD/DEAH box helicase Machinery gene
  K9864_RS18500 (K9864_18385) - 3685328..3686176 (-) 849 WP_003151387.1 DegV family protein -
  K9864_RS18505 (K9864_18390) degU 3686274..3686963 (-) 690 WP_111927758.1 two-component system response regulator DegU Regulator
  K9864_RS18510 (K9864_18395) degS 3687040..3688203 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  K9864_RS18515 (K9864_18400) - 3688426..3689073 (+) 648 WP_007614107.1 YigZ family protein -
  K9864_RS18520 (K9864_18405) - 3689078..3690292 (+) 1215 WP_014419013.1 LCP family protein -
  K9864_RS18525 (K9864_18410) - 3690382..3691458 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25794.51 Da        Isoelectric Point: 6.1191

>NTDB_id=605817 K9864_RS18505 WP_111927758.1 3686274..3686963(-) (degU) [Bacillus velezensis strain HC-8]
MTKVNIVIIDDHQLFRGGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=605817 K9864_RS18505 WP_111927758.1 3686274..3686963(-) (degU) [Bacillus velezensis strain HC-8]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGGGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTTTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGCTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996