Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   K9864_RS18485 Genome accession   NZ_CP083436
Coordinates   3682798..3683487 (-) Length   229 a.a.
NCBI ID   WP_197535984.1    Uniprot ID   -
Organism   Bacillus velezensis strain HC-8     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3677798..3688487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9864_RS18450 (K9864_18335) fliW 3677889..3678320 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  K9864_RS18455 (K9864_18340) - 3678350..3678919 (-) 570 WP_003151397.1 DUF6470 family protein -
  K9864_RS18460 (K9864_18345) flgL 3679010..3679927 (-) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  K9864_RS18465 (K9864_18350) flgK 3679939..3681456 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  K9864_RS18470 (K9864_18355) - 3681472..3681954 (-) 483 WP_003151394.1 flagellar protein FlgN -
  K9864_RS18475 (K9864_18360) flgM 3681969..3682235 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  K9864_RS18480 (K9864_18365) - 3682305..3682724 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  K9864_RS18485 (K9864_18370) comFC 3682798..3683487 (-) 690 WP_197535984.1 ComF family protein Machinery gene
  K9864_RS18490 (K9864_18375) - 3683493..3683777 (-) 285 WP_014419011.1 late competence development ComFB family protein -
  K9864_RS18495 (K9864_18380) comFA 3683835..3685220 (-) 1386 WP_014419012.1 DEAD/DEAH box helicase Machinery gene
  K9864_RS18500 (K9864_18385) - 3685328..3686176 (-) 849 WP_003151387.1 DegV family protein -
  K9864_RS18505 (K9864_18390) degU 3686274..3686963 (-) 690 WP_111927758.1 two-component system response regulator DegU Regulator
  K9864_RS18510 (K9864_18395) degS 3687040..3688203 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25250.91 Da        Isoelectric Point: 7.7729

>NTDB_id=605815 K9864_RS18485 WP_197535984.1 3682798..3683487(-) (comFC) [Bacillus velezensis strain HC-8]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKCFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=605815 K9864_RS18485 WP_197535984.1 3682798..3683487(-) (comFC) [Bacillus velezensis strain HC-8]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGTGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598