Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   HK86_RS15695 Genome accession   NC_021847
Coordinates   3334845..3335489 (+) Length   214 a.a.
NCBI ID   WP_020841339.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus O1:Kuk str. FDA_R31     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3329845..3340489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK86_RS15680 (M634_16070) - 3330329..3331774 (-) 1446 WP_020841337.1 hypothetical protein -
  HK86_RS15685 (M634_16075) csrD 3331786..3333795 (-) 2010 WP_020841338.1 RNase E specificity factor CsrD -
  HK86_RS15690 (M634_16080) ssb 3334036..3334566 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  HK86_RS15695 (M634_16085) qstR 3334845..3335489 (+) 645 WP_020841339.1 LuxR C-terminal-related transcriptional regulator Regulator
  HK86_RS15700 (M634_16090) galU 3335747..3336619 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HK86_RS15705 (M634_16095) uvrA 3336757..3339579 (+) 2823 WP_041170720.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24382.20 Da        Isoelectric Point: 8.7760

>NTDB_id=60552 HK86_RS15695 WP_020841339.1 3334845..3335489(+) (qstR) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
MRKSAYARKLFLISIEDDAAQKIASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=60552 HK86_RS15695 WP_020841339.1 3334845..3335489(+) (qstR) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATCGAAGACGATGCTGCGCAGAAAATCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAGCGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGTGAACTGCAA
GTGCTGCGTTGTCTGCAAGCCGGGGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTCAAAAAGCTCTCGGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

99.065

100

0.991
  qstR Vibrio campbellii strain DS40M4

88.318

100

0.883
  qstR Vibrio cholerae strain A1552

51.869

100

0.519

Multiple sequence alignment