Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   NLY75_RS08740 Genome accession   NZ_CP100432
Coordinates   1708064..1708714 (-) Length   216 a.a.
NCBI ID   WP_023371212.1    Uniprot ID   -
Organism   Streptococcus suis T15     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1703064..1713714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY75_RS08725 (NLY75_08725) - 1704564..1705472 (+) 909 WP_002936272.1 neutral zinc metallopeptidase -
  NLY75_RS08730 (NLY75_08730) - 1705681..1706232 (-) 552 WP_023371208.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NLY75_RS08735 (NLY75_08735) - 1706674..1708062 (-) 1389 WP_023371210.1 HAMP domain-containing sensor histidine kinase -
  NLY75_RS08740 (NLY75_08740) scnR 1708064..1708714 (-) 651 WP_023371212.1 response regulator transcription factor Regulator
  NLY75_RS08745 (NLY75_08745) - 1708946..1709647 (+) 702 WP_023371214.1 CPBP family intramembrane glutamic endopeptidase -
  NLY75_RS08750 (NLY75_08750) - 1710112..1710300 (-) 189 WP_079268875.1 LPXTG cell wall anchor domain-containing protein -
  NLY75_RS08755 (NLY75_08755) - 1710336..1711442 (-) 1107 WP_228476900.1 hypothetical protein -
  NLY75_RS08760 (NLY75_08760) - 1711533..1713287 (-) 1755 WP_228476691.1 serum opacification factor -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24742.85 Da        Isoelectric Point: 4.7792

>NTDB_id=605227 NLY75_RS08740 WP_023371212.1 1708064..1708714(-) (scnR) [Streptococcus suis T15]
MSRILVVEDDIVISQVVCEFLKEHGYQVESVFDGKVALERFQEEQFDLIVLDIMIPSMTGLEVLKEIRKTSQIPILMLTA
MGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRGKGDTDSIEIGTILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTVVGRGYQIEDT

Nucleotide


Download         Length: 651 bp        

>NTDB_id=605227 NLY75_RS08740 WP_023371212.1 1708064..1708714(-) (scnR) [Streptococcus suis T15]
ATGTCAAGGATCTTGGTTGTCGAGGATGACATAGTTATTAGTCAAGTTGTTTGTGAGTTTTTAAAAGAACATGGTTATCA
GGTAGAATCTGTTTTTGATGGAAAGGTTGCTTTAGAAAGGTTTCAAGAAGAACAATTCGATTTAATTGTTTTAGATATCA
TGATTCCGTCTATGACAGGTTTGGAAGTACTGAAGGAAATTCGCAAAACTTCTCAGATTCCAATTTTGATGCTGACAGCC
ATGGGTGACGAATATACACAGCTTATTAGTTTTAATCAGATTATAAGTGATTATGTTGTTAAACCATTTTCACCAACTAT
ATTGGTAAAACGGATTGAGAATATTTTGAGAGGAAAAGGAGATACAGATAGCATTGAGATAGGAACAATTCTTATTCAAC
CAACTAGCGGGGCAGTTTATATGGAAGAAGAAGAAGTTCAATTGACAAAAAAAGAATATGAAGTTTTACTATATTTAGCT
AAACGACGTGGGAAAATTGTTAGTCGTGATAACTTGATGATGGGAATATGGGGATATACGGAATTGGATAGTCGTGTCTT
AGATAATCATATCAAGAATATACGTAAAAAATTGCCGTCACTTCCTTTGAAGACAGTAGTTGGTCGCGGTTATCAAATAG
AGGATACTTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(144-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

37.838

100

0.389
  micA Streptococcus pneumoniae Cp1015

36.889

100

0.384
  vicR Streptococcus mutans UA159

36.283

100

0.38