Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6T58_RS06110 Genome accession   NZ_CP083263
Coordinates   1219471..1220100 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain JNU     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1214471..1225100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T58_RS06095 (K6T58_06085) helD 1214713..1216767 (-) 2055 WP_000420533.1 DNA helicase IV -
  K6T58_RS06100 (K6T58_06090) yccF 1216890..1217336 (+) 447 WP_001261231.1 YccF domain-containing protein -
  K6T58_RS06105 (K6T58_06095) yccS 1217346..1219508 (+) 2163 WP_000875044.1 YccS family putative transporter -
  K6T58_RS06110 (K6T58_06100) sxy/tfoX 1219471..1220100 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K6T58_RS06115 (K6T58_06105) sulA 1220319..1220828 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  K6T58_RS06120 (K6T58_06110) ompA 1221185..1222225 (+) 1041 WP_000750416.1 porin OmpA -
  K6T58_RS06125 (K6T58_06115) matP 1222301..1222753 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  K6T58_RS06130 (K6T58_06120) ycbZ 1222939..1224699 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=605205 K6T58_RS06110 WP_000839153.1 1219471..1220100(-) (sxy/tfoX) [Escherichia coli strain JNU]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=605205 K6T58_RS06110 WP_000839153.1 1219471..1220100(-) (sxy/tfoX) [Escherichia coli strain JNU]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1