Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   NLY76_RS07740 Genome accession   NZ_CP100430
Coordinates   1593519..1594169 (-) Length   216 a.a.
NCBI ID   WP_015647211.1    Uniprot ID   -
Organism   Streptococcus suis strain LSS42     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1588519..1599169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY76_RS07720 (NLY76_07720) xseA 1588559..1589902 (-) 1344 WP_044770038.1 exodeoxyribonuclease VII large subunit -
  NLY76_RS07725 (NLY76_07725) - 1590069..1590977 (+) 909 WP_024389095.1 neutral zinc metallopeptidase -
  NLY76_RS07730 (NLY76_07730) - 1591186..1591737 (-) 552 WP_015647209.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NLY76_RS07735 (NLY76_07735) - 1592129..1593517 (-) 1389 WP_044770036.1 HAMP domain-containing sensor histidine kinase -
  NLY76_RS07740 (NLY76_07740) scnR 1593519..1594169 (-) 651 WP_015647211.1 response regulator transcription factor Regulator
  NLY76_RS07745 (NLY76_07745) - 1594401..1595102 (+) 702 WP_024389093.1 CPBP family glutamic-type intramembrane protease -
  NLY76_RS07750 (NLY76_07750) - 1595336..1596581 (+) 1246 Protein_1485 ISL3 family transposase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24654.79 Da        Isoelectric Point: 4.8839

>NTDB_id=605032 NLY76_RS07740 WP_015647211.1 1593519..1594169(-) (scnR) [Streptococcus suis strain LSS42]
MSRILVVEDDIVISQVVCEFLKEHGYQVESVFDGKVALERFQEEQFDLIVLDIMIPSMTGLEVLKEIRKTSQVPILMLTA
MGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRGKGETDSIEIGAILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTVVGRGYQIEGT

Nucleotide


Download         Length: 651 bp        

>NTDB_id=605032 NLY76_RS07740 WP_015647211.1 1593519..1594169(-) (scnR) [Streptococcus suis strain LSS42]
ATGTCAAGGATCTTGGTTGTCGAGGATGACATAGTTATTAGTCAAGTTGTTTGTGAGTTTTTAAAAGAACATGGTTATCA
GGTAGAATCTGTTTTTGATGGAAAGGTTGCTTTAGAAAGGTTTCAAGAAGAACAATTCGATTTAATTGTTTTAGATATCA
TGATTCCGTCTATGACAGGTTTGGAAGTACTGAAGGAAATTCGAAAAACTTCTCAGGTTCCAATTTTGATGCTGACAGCC
ATGGGTGACGAATATACACAGCTTATTAGTTTTAATCAGATTATAAGTGATTATGTTGTTAAACCATTTTCACCAACTAT
ATTGGTAAAACGGATTGAGAATATTTTGAGAGGAAAAGGAGAGACAGATAGCATTGAGATAGGAGCAATTCTTATTCAAC
CAACTAGCGGGGCAGTTTATATGGAAGAAGAAGAAGTTCAATTGACGAAAAAAGAATATGAAGTTTTACTATATTTAGCT
AAACGACGTGGGAAAATTGTTAGTCGTGATAACTTGATGATGGGAATATGGGGATATACGGAATTGGATAGTCGTGTCTT
AGATAATCATATCAAGAATATCCGTAAGAAATTGCCGTCACTTCCTTTGAAGACAGTAGTTGGTCGAGGTTATCAAATAG
AGGGTACTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(144-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

38.767

100

0.407
  micA Streptococcus pneumoniae Cp1015

38.667

100

0.403
  vicR Streptococcus mutans UA159

37.168

100

0.389