Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   K9O37_RS01610 Genome accession   NZ_CP083181
Coordinates   343648..344388 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain AB43     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338648..349388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9O37_RS01595 (K9O37_01595) ponA 339235..341790 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  K9O37_RS01600 (K9O37_01600) pilM 341952..343010 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  K9O37_RS01605 (K9O37_01605) pilN 343010..343651 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  K9O37_RS01610 (K9O37_01610) pilO 343648..344388 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  K9O37_RS01615 (K9O37_01615) pilP 344399..344926 (+) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  K9O37_RS01620 (K9O37_01620) pilQ 344989..347154 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  K9O37_RS01625 (K9O37_01625) aroK 347166..347735 (+) 570 WP_000643712.1 shikimate kinase AroK -
  K9O37_RS01630 (K9O37_01630) aroB 347764..348846 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=604996 K9O37_RS01610 WP_000076101.1 343648..344388(+) (pilO) [Acinetobacter baumannii strain AB43]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=604996 K9O37_RS01610 WP_000076101.1 343648..344388(+) (pilO) [Acinetobacter baumannii strain AB43]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAGAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACATGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAACAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683