Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   K9O37_RS01605 Genome accession   NZ_CP083181
Coordinates   343010..343651 (+) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain AB43     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338010..348651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9O37_RS01585 (K9O37_01585) - 338058..338390 (+) 333 WP_000169599.1 hypothetical protein -
  K9O37_RS01590 (K9O37_01590) - 338393..339217 (+) 825 WP_004742150.1 putative RNA methyltransferase -
  K9O37_RS01595 (K9O37_01595) ponA 339235..341790 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  K9O37_RS01600 (K9O37_01600) pilM 341952..343010 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  K9O37_RS01605 (K9O37_01605) pilN 343010..343651 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  K9O37_RS01610 (K9O37_01610) pilO 343648..344388 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  K9O37_RS01615 (K9O37_01615) pilP 344399..344926 (+) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  K9O37_RS01620 (K9O37_01620) pilQ 344989..347154 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  K9O37_RS01625 (K9O37_01625) aroK 347166..347735 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=604995 K9O37_RS01605 WP_000201227.1 343010..343651(+) (pilN) [Acinetobacter baumannii strain AB43]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=604995 K9O37_RS01605 WP_000201227.1 343010..343651(+) (pilN) [Acinetobacter baumannii strain AB43]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709