Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   NKZ81_RS00375 Genome accession   NZ_CP100328
Coordinates   65486..66076 (+) Length   196 a.a.
NCBI ID   WP_024403269.1    Uniprot ID   -
Organism   Streptococcus suis strain STC86     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 60486..71076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKZ81_RS00365 (NKZ81_00365) - 61869..63392 (+) 1524 WP_044763875.1 quinol oxidase -
  NKZ81_RS00370 (NKZ81_00370) hexB 63510..65447 (+) 1938 WP_172060540.1 DNA mismatch repair endonuclease MutL Machinery gene
  NKZ81_RS00375 (NKZ81_00375) ruvA 65486..66076 (+) 591 WP_024403269.1 Holliday junction branch migration protein RuvA Machinery gene
  NKZ81_RS00380 (NKZ81_00380) - 66706..67275 (+) 570 WP_024417855.1 DNA-3-methyladenine glycosylase I -
  NKZ81_RS00385 (NKZ81_00385) cinA 67312..68493 (+) 1182 WP_024403265.1 competence/damage-inducible protein A Machinery gene
  NKZ81_RS00390 (NKZ81_00390) recA 68545..69696 (+) 1152 WP_024387809.1 recombinase RecA Machinery gene
  NKZ81_RS00395 (NKZ81_00395) spx 69932..70330 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  NKZ81_RS00400 (NKZ81_00400) - 70430..70696 (+) 267 WP_024403264.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21748.11 Da        Isoelectric Point: 5.3356

>NTDB_id=604077 NKZ81_RS00375 WP_024403269.1 65486..66076(+) (ruvA) [Streptococcus suis strain STC86]
MYDYIKGILTKITAKYIVVETHGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALEEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=604077 NKZ81_RS00375 WP_024403269.1 65486..66076(+) (ruvA) [Streptococcus suis strain STC86]
ATGTACGACTATATTAAAGGAATTTTAACAAAAATAACTGCAAAATACATTGTGGTAGAAACGCATGGAGTAGGCTATAT
CTTGCAAGTTGCTAACCCCTACGCCTACTCTGGACAAGTCCAGCAAGAAGTGACGGTCTATACTCATCAAGTGATTCGAG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACAGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCCATTGAGCAGAAGAACATTAC
CTACCTGACCAAGTTTCCAAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACTTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCCCTCGAAGAAGCCATGGAAGCCATGGAA
GCTCTTGGCTACCGACCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAACGACACCGCAGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

76.142

100

0.765
  ruvA Streptococcus pneumoniae D39

76.142

100

0.765
  ruvA Streptococcus pneumoniae TIGR4

76.142

100

0.765
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408