Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   K8351_RS02510 Genome accession   NZ_CP082947
Coordinates   460460..461056 (+) Length   198 a.a.
NCBI ID   WP_002779314.1    Uniprot ID   A0A0Q2JMT7
Organism   Campylobacter coli strain C203016     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 455460..466056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8351_RS02500 (K8351_02485) ctsR 458760..459071 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  K8351_RS02505 (K8351_02490) ctsD 459049..460467 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  K8351_RS02510 (K8351_02495) ctsP 460460..461056 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  K8351_RS02515 (K8351_02500) - 461053..461640 (+) 588 WP_002810825.1 CDC27 family protein -
  K8351_RS02520 (K8351_02505) ctsE 461633..463195 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  K8351_RS02525 (K8351_02510) ctsF 463182..464357 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  K8351_RS02530 (K8351_02515) - 464354..465118 (-) 765 WP_002784060.1 TSUP family transporter -
  K8351_RS02535 (K8351_02520) - 465121..465885 (-) 765 WP_002781156.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23633.42 Da        Isoelectric Point: 9.1569

>NTDB_id=603789 K8351_RS02510 WP_002779314.1 460460..461056(+) (ctsP) [Campylobacter coli strain C203016]
MNNIIAFRQECFDQINALLKNKALILLWGKSGSGKSVLLQRLALYHNEDFTNEIFTDEKDFHHFIQDKKRKIIILDEVGM
YSPNVLELIRIYSDEMSFVLSSHKKINLFEEEYFKSRFSAIFWLQKPDINELSNYIKMKFNQDFPQKSLKFLMKIYQGNL
RYLDKILQSFCELNTYLNNKKSQDYILRLSALEQGFLK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=603789 K8351_RS02510 WP_002779314.1 460460..461056(+) (ctsP) [Campylobacter coli strain C203016]
ATGAATAATATAATTGCTTTTAGACAAGAATGTTTTGATCAAATCAATGCCTTATTAAAAAATAAAGCTTTGATTTTACT
TTGGGGTAAAAGCGGTAGTGGGAAAAGTGTTTTATTGCAAAGACTTGCGCTATATCATAATGAAGATTTTACCAATGAAA
TTTTTACAGATGAAAAAGATTTTCATCATTTTATACAAGATAAAAAACGAAAAATTATCATACTAGATGAAGTGGGGATG
TATAGTCCTAATGTATTAGAACTAATTCGGATTTATAGCGATGAAATGAGTTTTGTGCTTAGCTCGCATAAAAAAATCAA
TCTTTTTGAAGAGGAGTATTTTAAAAGTCGTTTTAGTGCTATTTTTTGGCTTCAAAAACCTGATATAAATGAATTAAGCA
ATTATATCAAAATGAAATTTAATCAAGACTTTCCCCAAAAATCTTTAAAATTTCTTATGAAAATTTATCAAGGAAATTTA
AGGTATTTAGACAAGATACTTCAAAGTTTTTGCGAATTAAACACCTATTTAAACAATAAAAAAAGTCAAGATTATATTTT
AAGACTAAGCGCATTAGAGCAGGGATTTTTAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2JMT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

57.921

100

0.591