Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   K8L98_RS18245 Genome accession   NZ_CP082944
Coordinates   3665805..3668180 (-) Length   791 a.a.
NCBI ID   WP_223436895.1    Uniprot ID   -
Organism   Metabacillus dongyingensis strain BY2G20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3660805..3673180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8L98_RS18230 (K8L98_18215) - 3663513..3664574 (-) 1062 WP_223436891.1 AI-2E family transporter -
  K8L98_RS18235 (K8L98_18220) - 3665096..3665287 (-) 192 WP_070879785.1 hypothetical protein -
  K8L98_RS18240 (K8L98_18225) - 3665302..3665802 (-) 501 WP_223436893.1 PRC-barrel domain-containing protein -
  K8L98_RS18245 (K8L98_18230) recD2 3665805..3668180 (-) 2376 WP_223436895.1 ATP-dependent RecD-like DNA helicase Machinery gene
  K8L98_RS18250 (K8L98_18235) - 3668210..3668863 (-) 654 WP_223436897.1 tetratricopeptide repeat protein -
  K8L98_RS18255 (K8L98_18240) mnmA 3668942..3670057 (-) 1116 WP_223436900.1 tRNA 2-thiouridine(34) synthase MnmA -
  K8L98_RS18260 (K8L98_18245) - 3670084..3671226 (-) 1143 WP_223436902.1 cysteine desulfurase family protein -
  K8L98_RS18265 (K8L98_18250) cymR 3671242..3671658 (-) 417 WP_223436903.1 cysteine metabolism transcriptional regulator CymR -
  K8L98_RS18270 (K8L98_18255) - 3671677..3672348 (-) 672 WP_223436905.1 YczE/YyaS/YitT family protein -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 89275.42 Da        Isoelectric Point: 5.0720

>NTDB_id=603757 K8L98_RS18245 WP_223436895.1 3665805..3668180(-) (recD2) [Metabacillus dongyingensis strain BY2G20]
MQQKADLFQEQERFLKGKIITVIYQNDQNHYTVLKTEVLETSENYDQKEITVTGYFPLLHEDETYTFFGMLTQHPKFGQQ
FQAEHYRKEIPKTRDGVIQYLSSDLFKGIGRKTAEAIVDVLGEGAISKMMEDPSVLDKVPKLGKDKAKQLLDQLKEHQGL
EQAMISLNQLGFGPQLSMKIYQAYQERTIQVIQENPFQLVKDIEGIGFVRADELGGQMGLGGNHPERIKAACFYTIEHLC
LQEGHTYVSLEQLIIKSMELLNSSKSSGIIETDISEQVIKLAEDKGIIIEEDRAYLPSLFFAEQGLVKSIQRVLLQTEYE
SIFPESEFLLSLGKLEERMKVQYAPTQKEAIQTALMSPMLLLTGGPGTGKTTVIKGIVELYADLHGCSLEQKDYKKEEPF
PISLVAPTGRAAKRMTEATGLPAVTIHRLLKWNGAEGFDHGEDNPIGAKLLIVDEMSMVDTWIANQLFKALPEHIQVIMV
GDEDQLPSVGPGQVLRDLLESEAVPVVRLTDIYRQAEGSSIIELAHDIKKGRLPDNLAAPTKDRSFIRCSGAQVKEVVEK
VISNAIKKGYTARDVQVLAPMYRGPAGIDQLNIMLQQLFNPKAENKREMKFGETVYRSGDKVLQLVNQPESNVYNGDIGE
IVSIFYAKENTEKEDMIVISFDGNEVTYTKSDFNQFTHAFCCSIHKSQGSEFPIVVVPVVKSYYRMLRRNLIYTAITRSK
QFLILCGEQDALLRGIENRDHLSRQTSLKMKLSEKQHMIEELTEELPFDLADAMIGMEGITPYDFMEDNKI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=603757 K8L98_RS18245 WP_223436895.1 3665805..3668180(-) (recD2) [Metabacillus dongyingensis strain BY2G20]
GTGCAGCAAAAGGCGGACCTGTTTCAAGAGCAGGAACGGTTTTTAAAAGGAAAGATCATCACGGTTATTTATCAGAATGA
CCAAAACCATTATACCGTCTTAAAGACGGAGGTTCTTGAAACGAGCGAAAATTATGATCAAAAAGAAATAACCGTGACAG
GCTATTTTCCTCTTCTGCATGAAGATGAAACATATACATTCTTTGGGATGCTGACACAGCATCCCAAATTTGGCCAGCAA
TTTCAGGCTGAGCATTACCGGAAAGAAATTCCCAAAACGCGCGACGGTGTAATACAATACCTTTCAAGCGACCTGTTTAA
AGGGATAGGCAGGAAAACAGCTGAAGCGATAGTGGATGTACTTGGAGAAGGCGCAATTTCGAAAATGATGGAAGATCCTT
CTGTGCTTGATAAAGTGCCGAAGCTCGGCAAAGACAAAGCAAAACAGCTGCTTGATCAGCTGAAGGAGCATCAGGGTCTA
GAGCAGGCCATGATTAGTTTAAATCAGCTTGGCTTCGGCCCTCAGCTTTCTATGAAAATTTACCAGGCCTATCAGGAAAG
AACGATCCAAGTGATTCAGGAAAATCCTTTTCAGCTAGTTAAAGATATCGAGGGAATTGGCTTCGTGCGCGCTGATGAGC
TTGGAGGACAAATGGGCCTCGGCGGAAACCATCCTGAGAGGATTAAAGCGGCTTGCTTTTATACAATTGAACATCTTTGC
CTGCAAGAAGGCCATACATATGTTTCACTGGAGCAGTTAATTATAAAATCAATGGAATTGCTGAATTCATCGAAGAGTTC
AGGAATCATTGAAACAGATATCTCAGAGCAAGTGATCAAACTTGCAGAAGATAAAGGAATTATTATTGAAGAAGACAGAG
CTTATCTGCCGTCTCTGTTTTTTGCTGAACAGGGACTTGTGAAAAGTATCCAGCGTGTCCTTTTGCAGACAGAATATGAG
AGCATTTTTCCTGAATCAGAGTTTTTGCTTTCACTCGGGAAACTGGAAGAGAGAATGAAAGTGCAGTACGCCCCGACTCA
AAAAGAAGCCATCCAAACGGCTCTGATGTCTCCTATGCTTCTGCTTACGGGAGGACCTGGTACAGGCAAGACGACCGTTA
TAAAAGGGATTGTTGAGCTTTACGCAGATTTGCATGGCTGTTCTCTTGAGCAAAAAGACTATAAAAAAGAAGAGCCTTTT
CCAATCTCATTAGTTGCTCCGACAGGACGGGCAGCAAAAAGAATGACAGAAGCAACAGGCCTGCCGGCTGTAACGATTCA
CCGGCTGTTAAAGTGGAACGGTGCAGAAGGATTTGACCACGGTGAGGATAACCCGATCGGTGCAAAACTGCTGATTGTTG
ATGAAATGTCGATGGTGGACACTTGGATTGCAAATCAGCTGTTTAAAGCTCTGCCTGAACATATTCAGGTCATAATGGTT
GGAGATGAAGATCAGCTGCCCTCTGTAGGACCTGGTCAAGTACTGCGTGATTTGCTTGAGTCTGAGGCAGTTCCCGTCGT
AAGACTTACGGATATTTATAGACAGGCAGAGGGTTCATCCATAATAGAGCTTGCACATGATATTAAAAAAGGAAGGCTGC
CTGATAATCTGGCTGCACCTACTAAAGACAGATCCTTTATCCGGTGCAGCGGTGCACAAGTAAAAGAAGTGGTTGAGAAA
GTCATATCAAACGCCATCAAAAAAGGATATACAGCCCGAGATGTTCAGGTGCTTGCTCCCATGTACCGCGGGCCTGCTGG
CATAGATCAGCTTAATATTATGCTGCAGCAGCTGTTTAATCCTAAAGCTGAAAACAAAAGGGAAATGAAGTTCGGCGAGA
CTGTATACAGATCGGGTGACAAAGTTCTTCAGCTCGTTAATCAGCCTGAGAGCAATGTTTATAATGGCGATATTGGCGAG
ATTGTGTCCATTTTTTATGCAAAGGAAAACACTGAAAAAGAAGATATGATTGTCATCTCTTTTGATGGCAATGAGGTCAC
ATATACAAAATCAGATTTCAATCAATTTACGCATGCTTTTTGCTGCTCGATCCACAAATCTCAGGGCAGCGAATTTCCGA
TTGTTGTTGTGCCTGTCGTCAAAAGCTATTACAGAATGCTTAGAAGAAACTTAATTTATACGGCCATTACAAGAAGCAAG
CAGTTTTTAATCCTTTGCGGGGAACAAGATGCCCTTTTGCGGGGTATTGAAAACAGAGATCATTTAAGCCGGCAGACCTC
TTTAAAAATGAAGCTTTCAGAAAAACAGCATATGATTGAAGAGCTTACAGAGGAGCTTCCTTTTGATCTTGCTGATGCCA
TGATCGGAATGGAAGGCATTACCCCGTATGACTTTATGGAAGACAACAAAATCTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

AAA domain (AAA_30)

(343-550)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

69.182

100

0.695