Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   K8L98_RS18330 Genome accession   NZ_CP082944
Coordinates   3684843..3687191 (-) Length   782 a.a.
NCBI ID   WP_223436927.1    Uniprot ID   -
Organism   Metabacillus dongyingensis strain BY2G20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3679843..3692191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8L98_RS18310 (K8L98_18295) - 3680909..3681244 (-) 336 WP_223436919.1 hypothetical protein -
  K8L98_RS18315 (K8L98_18300) dtd 3681502..3681948 (-) 447 WP_223436921.1 D-aminoacyl-tRNA deacylase -
  K8L98_RS18320 (K8L98_18305) - 3681965..3684157 (-) 2193 WP_223436923.1 RelA/SpoT family protein -
  K8L98_RS18325 (K8L98_18310) - 3684314..3684826 (-) 513 WP_223436925.1 adenine phosphoribosyltransferase -
  K8L98_RS18330 (K8L98_18315) recJ 3684843..3687191 (-) 2349 WP_223436927.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  K8L98_RS18335 (K8L98_18320) - 3687252..3687596 (-) 345 WP_223436929.1 LapA family protein -
  K8L98_RS18340 (K8L98_18325) secDF 3687749..3689995 (-) 2247 WP_223443576.1 protein translocase subunit SecDF -
  K8L98_RS18345 (K8L98_18330) - 3690036..3690329 (-) 294 WP_223436930.1 post-transcriptional regulator -
  K8L98_RS18350 (K8L98_18335) spoVB 3690476..3692041 (+) 1566 WP_223436932.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 782 a.a.        Molecular weight: 87273.61 Da        Isoelectric Point: 5.3429

>NTDB_id=603758 K8L98_RS18330 WP_223436927.1 3684843..3687191(-) (recJ) [Metabacillus dongyingensis strain BY2G20]
MLKAKTRWDVSNHHPDKADELINTMKVTPLVASLLINRGIETAEQADQFLNIEKHGFLDPFMLLGMDKTVKRINDAITNQ
EKILIFGDYDADGVSSTTVLLETLTSLGANADFYIPNRFTEGYGPNEMAFRHAHDEGFSLIITVDTGISAVNEAALAKEL
GVDLIITDHHEPGPVLPDAYAIIHPKQPDCQYPFKELAGVGVAFKLAHALLGKAPEHLLEIAAIGTIADLVPLHGENRLI
ARLGIQQLKRTERKGLKALLKAAGADGKDVNEETIGFAIGPRINAVGRLESADPAVHLLMSEDDDEAQSLAKDIDLLNKE
RQKIVSQITEEAIEQVESMYPIEENPVLVLAKEDWNPGVVGIVASRMVEKYYRPTIILSIDHGKKMAKGSARSIAGFDLF
ANLSTCRDILPHFGGHPMAAGMTLDIDDVDQLRQRLNALAAERLTDKDFIPIKTIDAECTLAEITTDSIEEIGLLAPFGM
SNPKPLFLLDSVQLGSMRKIGSDQTHLKLAVEQNHQQLDCIGFGFGHLHDHMAPLAKVSMVGELSINEWNNFRKPQFMIQ
DLAVNEWQLFDARGTRNLQKAIEKINDEKNVHIVFQKETLSMLEGSDLNILFLESGHASGDLDLKDKYVTFIDTPSSIEH
LNALFAGARPDRIYAIFHQHTEHFFATIPTREHFKWYYGFLKQKGSFDLKKHAEALARHKGWSKETIDFMSQVFFDLEFA
TIENGIISVNHHPPKRDLAESTAYASKLQQLELENTLLYSSYQDLKIWFDERMKISSTLVNA

Nucleotide


Download         Length: 2349 bp        

>NTDB_id=603758 K8L98_RS18330 WP_223436927.1 3684843..3687191(-) (recJ) [Metabacillus dongyingensis strain BY2G20]
TTGCTGAAAGCGAAGACTAGATGGGATGTTTCTAACCACCATCCGGATAAGGCTGATGAATTGATAAATACGATGAAAGT
TACGCCTCTGGTAGCTTCCCTGTTAATAAATCGCGGAATTGAAACTGCTGAGCAGGCCGACCAATTCCTGAATATTGAAA
AGCATGGTTTTTTGGATCCATTCATGCTCCTTGGAATGGACAAAACTGTTAAGCGTATTAACGATGCGATTACTAATCAA
GAAAAGATTTTGATTTTTGGAGATTATGATGCAGATGGAGTGAGCTCTACGACTGTTTTGCTCGAAACGCTTACCTCACT
CGGAGCTAATGCTGATTTTTATATACCTAATCGTTTTACTGAAGGATATGGTCCAAATGAGATGGCTTTCCGCCATGCTC
ATGATGAAGGTTTTTCTTTAATCATTACGGTTGATACAGGGATCTCGGCTGTGAATGAAGCAGCTCTTGCAAAAGAGCTG
GGCGTTGATCTGATCATAACCGATCATCATGAACCAGGACCGGTTCTTCCTGATGCTTATGCGATTATCCATCCAAAGCA
GCCTGATTGCCAATATCCTTTCAAAGAGTTAGCCGGTGTGGGCGTAGCTTTTAAGCTTGCCCATGCACTGCTTGGCAAAG
CACCAGAGCATTTGCTTGAAATTGCCGCAATAGGAACCATCGCGGACCTTGTTCCGCTTCACGGCGAGAATCGGCTGATT
GCACGCCTTGGCATTCAGCAATTAAAACGTACAGAACGAAAAGGGTTAAAAGCGCTGCTTAAAGCAGCAGGAGCTGATGG
AAAAGATGTAAATGAAGAGACGATTGGATTTGCCATCGGTCCGCGGATCAATGCCGTAGGGAGGCTGGAATCTGCTGATC
CGGCCGTTCATCTCCTTATGTCAGAAGATGATGATGAGGCACAAAGTCTTGCAAAAGACATTGACTTGCTCAATAAAGAA
AGACAGAAAATCGTCTCGCAAATTACGGAAGAGGCAATCGAACAAGTAGAATCCATGTATCCGATTGAAGAAAATCCGGT
TCTTGTTCTAGCAAAAGAAGATTGGAACCCCGGCGTTGTCGGAATTGTAGCTTCGAGAATGGTAGAGAAATATTATAGAC
CTACGATTATCTTAAGCATTGACCACGGCAAGAAAATGGCTAAAGGATCTGCAAGAAGCATTGCGGGTTTTGATTTATTT
GCTAATTTGTCAACATGCCGGGACATTCTGCCGCATTTCGGAGGACATCCAATGGCAGCTGGAATGACACTTGATATTGA
TGATGTTGACCAATTGAGACAGCGATTGAATGCCCTTGCGGCTGAGAGGCTGACTGACAAAGATTTCATACCCATCAAAA
CGATTGATGCGGAATGTACTCTTGCTGAAATCACTACGGACTCCATCGAAGAAATTGGGCTGCTCGCTCCGTTTGGCATG
AGCAACCCGAAGCCTCTCTTCCTGCTTGACTCCGTTCAATTAGGGTCAATGAGGAAGATAGGGTCAGATCAAACACATTT
GAAACTGGCGGTTGAACAAAATCATCAGCAGCTCGATTGTATCGGATTCGGATTTGGGCATCTTCATGATCATATGGCTC
CTCTTGCAAAAGTGTCAATGGTTGGTGAATTATCTATTAATGAATGGAATAACTTCCGGAAGCCGCAATTCATGATCCAG
GATCTCGCTGTCAATGAGTGGCAGCTGTTTGATGCAAGAGGAACCCGCAATCTTCAAAAAGCGATTGAAAAAATAAATGA
TGAAAAAAATGTCCATATCGTTTTCCAAAAAGAAACGCTCTCTATGCTTGAAGGCTCGGATCTCAATATTCTATTTTTGG
AAAGCGGCCATGCTTCGGGCGACTTGGATTTAAAAGATAAATATGTCACATTCATTGACACGCCATCTTCTATAGAACAT
CTGAATGCCCTTTTTGCAGGAGCGCGCCCGGACCGGATCTATGCAATTTTTCATCAGCATACGGAACATTTTTTTGCCAC
AATACCAACGAGGGAACACTTCAAATGGTATTATGGATTTTTGAAACAAAAAGGGTCATTTGACTTAAAAAAACATGCAG
AAGCGCTTGCCCGGCATAAAGGCTGGTCAAAAGAAACAATAGATTTCATGTCACAGGTGTTTTTTGACCTGGAATTTGCT
ACAATAGAGAATGGCATTATTTCTGTCAATCATCATCCGCCAAAAAGAGATCTAGCCGAATCTACTGCGTATGCTTCTAA
GCTTCAGCAATTAGAGCTTGAAAATACGCTACTATATTCGTCATACCAGGATTTAAAAATATGGTTTGATGAAAGAATGA
AAATATCGTCAACGCTTGTCAATGCATGA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-769)

DHHA1 domain (DHHA1)

(316-439)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.969

99.616

0.558