Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NI386_RS11050 Genome accession   NZ_CP099924
Coordinates   604443..604901 (-) Length   152 a.a.
NCBI ID   WP_021486793.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Isc7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 599443..609901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI386_RS11030 (NI386_11005) coaE 599962..600576 (-) 615 WP_005480887.1 dephospho-CoA kinase -
  NI386_RS11035 (NI386_11010) pilD 600577..601446 (-) 870 WP_025533026.1 A24 family peptidase Machinery gene
  NI386_RS11040 (NI386_11015) pilC 601511..602734 (-) 1224 WP_005479682.1 type II secretion system F family protein Machinery gene
  NI386_RS11045 (NI386_11020) pilB 602758..604443 (-) 1686 WP_029855968.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NI386_RS11050 (NI386_11025) pilE 604443..604901 (-) 459 WP_021486793.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NI386_RS11055 (NI386_11030) nadC 605165..606052 (-) 888 WP_025638275.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NI386_RS11060 (NI386_11035) ampD 606145..606696 (+) 552 WP_005484832.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  NI386_RS11065 (NI386_11040) pdhR 607102..607869 (+) 768 WP_005462576.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 15442.56 Da        Isoelectric Point: 5.7425

>NTDB_id=603502 NI386_RS11050 WP_021486793.1 604443..604901(-) (pilE) [Vibrio parahaemolyticus strain Isc7]
MKHSKQKKQQGFTLIELMIVVAIIGILAAFAVPAYSDYTQRTRVAGAAAGISGFKTAIAMCAQERGQLTGCSNGANDIPA
AIAANNAGATIAYVDDLTVTDGVIAMTTTGVNDSGTELTLTLTPNIGNGVVQWTLAGTGCTTAGRSIDCSGN

Nucleotide


Download         Length: 459 bp        

>NTDB_id=603502 NI386_RS11050 WP_021486793.1 604443..604901(-) (pilE) [Vibrio parahaemolyticus strain Isc7]
ATGAAACACAGTAAACAGAAAAAACAGCAAGGTTTTACGCTAATTGAATTGATGATTGTGGTGGCGATTATCGGTATTTT
GGCTGCATTTGCCGTGCCTGCCTACTCAGACTACACACAACGAACCCGTGTGGCCGGTGCAGCTGCAGGGATCAGTGGTT
TTAAAACAGCCATTGCCATGTGTGCTCAGGAACGTGGCCAGCTTACCGGTTGTAGCAACGGCGCAAATGATATCCCGGCA
GCAATTGCCGCGAATAACGCCGGTGCGACCATTGCTTATGTGGACGACTTAACGGTTACCGATGGCGTTATCGCCATGAC
CACGACCGGAGTTAATGACTCAGGTACCGAGCTAACACTGACGTTAACACCGAATATTGGCAATGGCGTTGTTCAGTGGA
CACTTGCTGGTACTGGCTGTACAACCGCTGGACGCAGCATTGATTGTTCTGGTAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-31)

Pilin (bacterial filament) (Pilin)

(41-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila strain ERS1305867

39.726

96.053

0.382
  pilA2 Legionella pneumophila str. Paris

38.462

94.079

0.362
  pilE Neisseria gonorrhoeae strain FA1090

38.194

94.737

0.362