Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   HK74_RS03085 Genome accession   NC_021834
Coordinates   603705..604292 (-) Length   195 a.a.
NCBI ID   WP_002851370.1    Uniprot ID   A0AB36G4D4
Organism   Campylobacter jejuni 32488     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 598705..609292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK74_RS03065 (M635_03035) - 599453..600217 (+) 765 WP_002851318.1 TIGR02757 family protein -
  HK74_RS03070 (M635_03040) - 600221..600985 (+) 765 WP_002871861.1 TSUP family transporter -
  HK74_RS03075 (M635_03045) ctsF 600978..602159 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  HK74_RS03080 (M635_03050) ctsE 602156..603715 (-) 1560 WP_020836902.1 GspE/PulE family protein Machinery gene
  HK74_RS03085 (M635_03055) ctsX 603705..604292 (-) 588 WP_002851370.1 membrane protein Machinery gene
  HK74_RS03090 (M635_03060) ctsP 604296..604904 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  HK74_RS03095 (M635_03065) ctsD 604897..606315 (-) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  HK74_RS03100 (M635_03070) ctsR 606287..606604 (-) 318 WP_002851255.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23359.43 Da        Isoelectric Point: 9.8409

>NTDB_id=60339 HK74_RS03085 WP_002851370.1 603705..604292(-) (ctsX) [Campylobacter jejuni 32488]
MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=60339 HK74_RS03085 WP_002851370.1 603705..604292(-) (ctsX) [Campylobacter jejuni 32488]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTATTAAT
TATTCTAATATCAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAGG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGTGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment