Detailed information NTG0060337

Bioinformatically predicted

Overview

• Name: ctsF
• Type: Machinery gene
• Locus tag: HK74_RS03075
• Genome accession: NC_021834
• Coordinates: 600978..602159 (-)
• Length: 393 a.a.
• NCBI ID: WP_002868229.1
• Uniprot ID: A0AB36G5F3
• Organism: Campylobacter jejuni 32488
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 595978..607159

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HK74_RS03045 (M635_03015)	-	596522..596863 (+)	342	WP_002784057.1	hypothetical protein	-
HK74_RS03050 (M635_03020)	flgM	596926..597123 (+)	198	WP_002779262.1	flagellar biosynthesis anti-sigma factor FlgM	-
HK74_RS03055 (M635_03025)	-	597166..597600 (+)	435	WP_002779263.1	flagellar protein FlgN	-
HK74_RS03060 (M635_03030)	flgK	597610..599436 (+)	1827	WP_002871863.1	flagellar hook-associated protein FlgK	-
HK74_RS03065 (M635_03035)	-	599453..600217 (+)	765	WP_002851318.1	TIGR02757 family protein	-
HK74_RS03070 (M635_03040)	-	600221..600985 (+)	765	WP_002871861.1	TSUP family transporter	-
HK74_RS03075 (M635_03045)	ctsF	600978..602159 (-)	1182	WP_002868229.1	type II secretion system F family protein	Machinery gene
HK74_RS03080 (M635_03050)	ctsE	602156..603715 (-)	1560	WP_020836902.1	GspE/PulE family protein	Machinery gene
HK74_RS03085 (M635_03055)	ctsX	603705..604292 (-)	588	WP_002851370.1	membrane protein	Machinery gene
HK74_RS03090 (M635_03060)	ctsP	604296..604904 (-)	609	WP_002851464.1	ATP-binding protein	Machinery gene
HK74_RS03095 (M635_03065)	ctsD	604897..606315 (-)	1419	WP_002851309.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
HK74_RS03100 (M635_03070)	ctsR	606287..606604 (-)	318	WP_002851255.1	hypothetical protein	Machinery gene

Sequence

Protein

• Length: 393 a.a.
• Molecular weight: 45730.33 Da
• Isoelectric Point: 9.0938

>NTDB_id=60337 HK74_RS03075 WP_002868229.1 600978..602159(-) (ctsF) [Campylobacter jejuni 32488]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide

• Length: 1182 bp

>NTDB_id=60337 HK74_RS03075 WP_002868229.1 600978..602159(-) (ctsF) [Campylobacter jejuni 32488]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTGTCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAGATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGTTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (261-382)

• Type II secretion system (T2SS), protein F (T2SSF) (60-179)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsF	Campylobacter jejuni subsp. jejuni 81-176	98.98	99.746	0.987