Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   HK74_RS03100 Genome accession   NC_021834
Coordinates   606287..606604 (-) Length   105 a.a.
NCBI ID   WP_002851255.1    Uniprot ID   Q0P8E2
Organism   Campylobacter jejuni 32488     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 601287..611604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK74_RS03080 (M635_03050) ctsE 602156..603715 (-) 1560 WP_020836902.1 GspE/PulE family protein Machinery gene
  HK74_RS03085 (M635_03055) ctsX 603705..604292 (-) 588 WP_002851370.1 membrane protein Machinery gene
  HK74_RS03090 (M635_03060) ctsP 604296..604904 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  HK74_RS03095 (M635_03065) ctsD 604897..606315 (-) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  HK74_RS03100 (M635_03070) ctsR 606287..606604 (-) 318 WP_002851255.1 hypothetical protein Machinery gene
  HK74_RS03105 (M635_03075) nifJ 606628..610188 (-) 3561 WP_020836903.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  HK74_RS03110 (M635_03080) - 610281..610922 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 12702.64 Da        Isoelectric Point: 5.8722

>NTDB_id=60342 HK74_RS03100 WP_002851255.1 606287..606604(-) (ctsR) [Campylobacter jejuni 32488]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKINININ

Nucleotide


Download         Length: 318 bp        

>NTDB_id=60342 HK74_RS03100 WP_002851255.1 606287..606604(-) (ctsR) [Campylobacter jejuni 32488]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8E2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

98.095

0.981

Multiple sequence alignment