Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   NI388_RS04990 Genome accession   NZ_CP099919
Coordinates   1056981..1059011 (+) Length   676 a.a.
NCBI ID   WP_308390634.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Isc14B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1051981..1064011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI388_RS04970 (NI388_04965) rsxC 1052194..1054803 (-) 2610 WP_308390633.1 electron transport complex subunit RsxC -
  NI388_RS04975 (NI388_04970) rsxB 1054812..1055408 (-) 597 WP_005480813.1 electron transport complex subunit RsxB -
  NI388_RS04980 (NI388_04975) rsxA 1055412..1055990 (-) 579 WP_005380762.1 electron transport complex subunit RsxA -
  NI388_RS04990 (NI388_04985) uvrB 1056981..1059011 (+) 2031 WP_308390634.1 excinuclease ABC subunit UvrB Machinery gene
  NI388_RS04995 (NI388_04990) luxO 1059301..1060704 (+) 1404 WP_005461534.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  NI388_RS05000 (NI388_04995) luxU 1060707..1061045 (+) 339 WP_308390635.1 quorum-sensing phosphorelay protein LuxU -
  NI388_RS05005 (NI388_05000) - 1061122..1062015 (-) 894 WP_005494500.1 YvcK family protein -
  NI388_RS05010 (NI388_05005) moaA 1062311..1063300 (+) 990 WP_005494502.1 GTP 3',8-cyclase MoaA -
  NI388_RS05015 (NI388_05010) moaB 1063403..1063915 (+) 513 WP_005482393.1 molybdenum cofactor biosynthesis protein B -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 77072.75 Da        Isoelectric Point: 4.8615

>NTDB_id=603338 NI388_RS04990 WP_308390634.1 1056981..1059011(+) (uvrB) [Vibrio parahaemolyticus strain Isc14B]
MSKVYELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLAPNKTLAAQLYGEMKSF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLH
LRRGDVIDQRDMLRRLAELQYSRNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLP
RYTIYPKTHYVTPRDRILEAIESIKVELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRSEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVEFGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNY
ELEKSAGEIADQVVRPTGLLDPILEVRPVATQVDDLLSEIRIRTAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNIEGKAILYADSITK
SMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIMELGDITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEIS
RLEAAMYQHAQDLEFELAAEKRDEIEKLRAQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=603338 NI388_RS04990 WP_308390634.1 1056981..1059011(+) (uvrB) [Vibrio parahaemolyticus strain Isc14B]
ATGAGTAAAGTTTATGAACTGGTCTCTGAGTATCAACCATCAGGTGACCAGCCAACCGCGATTAAGCAATTATTAGAAGG
CTTAGATGCGGGGTTGGCGCATCAGACGCTTTTAGGTGTAACGGGTTCTGGTAAAACGTTCACGCTAGCGAATGTGATTG
CTCAAGCACAGCGCCCTGCAATTTTACTGGCGCCAAATAAAACCCTCGCGGCTCAGTTGTATGGGGAAATGAAATCGTTC
TTTCCTAACAATGCGGTCGAGTATTTTGTGTCTTACTACGACTACTATCAACCAGAAGCGTACGTGCCTACAACTGACAC
CTTTATTGAAAAAGATGCGTCAGTGAACGCTCACATTGAGCAAATGCGTTTGTCTGCCACCAAAGCTTTACTAGAACGAA
AAGACGCCATCATCGTCGCTTCGGTCTCAGCCATTTATGGTTTGGGTGATCCCGAGTCGTATTTACAGATGATGCTGCAC
TTACGCCGTGGTGACGTGATCGATCAGCGTGACATGCTTCGTCGCTTAGCGGAACTTCAATACTCGCGTAATGATGTCGC
TTTTGAACGCGGTCAGTTCCGTGTTCGCGGCGAAGTGATCGACATATTCCCAGCTGAGTCTGACCAAGATGCTGTCCGTG
TTGAAATGTTTGATGATGAAGTGGATTGTATCAGTGTGTTTGACCCATTGACGGGTGTCGTGAAACAAAGAGATTTGCCG
CGTTACACGATTTACCCGAAAACGCACTACGTGACGCCCCGCGACCGTATTCTCGAAGCGATAGAAAGCATCAAAGTTGA
GCTCGAAGTACGCAAGAAACAATTACTAGAGAATAACAAGCTAATAGAAGAGCAGCGCATTAGCCAGCGTACACAGTTTG
ATATCGAGATGATGAATGAGCTCGGTTTCTGCTCTGGTATCGAAAACTACTCACGTTATCTCAGTGGTCGTTCTGAGGGT
GAGCCGCCTCCAACCTTGTTCGATTACTTGCCTCATGATGGTTTGCTTATCATCGATGAGTCCCACGTGACTGTACCGCA
GATTGGTGCGATGTATAAAGGTGACCGTTCACGTAAAGAAACTCTGGTTGAGTTTGGTTTCCGCTTACCATCGGCGTTGG
ACAACCGTCCTCTAAAATTTGAAGAATTTGAGTCTCTTGCTCCGCAAACTATTTTCGTCTCGGCAACGCCGGGCAATTAT
GAGCTAGAGAAATCGGCAGGTGAAATTGCGGATCAAGTCGTGCGTCCTACCGGCTTGCTGGATCCAATACTCGAAGTTCG
ACCAGTCGCGACTCAGGTCGATGATCTATTGTCTGAAATTCGTATTCGTACCGCCAAAGAGGAACGTGTTCTTGTTACGA
CTCTGACCAAACGAATGGCGGAAGATTTAACGGAATATCTGCATGAACATGATGTTCGTGTTCGATATCTTCACTCCGAC
ATCGACACGGTAGAGCGCGTCGAGATCATTCGAGATTTGCGCTTAGGTGAGTTCGATGTCTTAGTGGGTATCAACTTGCT
TCGAGAAGGTTTGGATATGCCGGAAGTCTCGCTGGTGGCAATTTTGGATGCCGACAAAGAAGGTTTCTTGCGTTCAGAAC
GTTCACTCATTCAGACGATAGGTCGTGCTGCACGAAACATTGAGGGTAAAGCGATTCTCTATGCGGATAGCATTACAAAA
TCGATGAAAAAAGCGATGGATGAAACCAATCGTCGTCGTGAGAAGCAGCAAGCGTACAACGAGAAAATGGGCATTACGCC
GCAAGCGTTAAAACGTAATATCAAGGATATTATGGAATTGGGCGACATTACTAAGTCCAAACGTCAACGCAATACTAAGC
AAGTGCCACTGTCTAAAGTGGCTGAACCATCTCAAACTTACGAAGTGATGTCTCCACAACAATTGGAGAAGGAAATCAGT
CGACTAGAAGCGGCGATGTACCAACATGCTCAGGATCTGGAATTCGAGCTTGCGGCTGAGAAGCGTGATGAAATAGAAAA
ACTGCGTGCGCAATTCATCGCGAATAGCTAG

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(553-594)

UvrB/uvrC motif (UVR)

(636-671)

UvrB interaction domain (UvrB_inter)

(159-250)

Type III restriction enzyme, res subunit (ResIII)

(13-129)

Helicase conserved C-terminal domain (Helicase_C)

(438-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.856

98.521

0.55
  uvrB Streptococcus pneumoniae R6

55.856

98.521

0.55
  uvrB Streptococcus pneumoniae D39

55.856

98.521

0.55