Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   K8O83_RS09410 Genome accession   NZ_CP082857
Coordinates   1828666..1829340 (-) Length   224 a.a.
NCBI ID   WP_005647998.1    Uniprot ID   Q4QLV0
Organism   Haemophilus aegyptius strain FDAARGOS_1478     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1823666..1834340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O83_RS09390 (K8O83_09280) hinT 1825370..1825720 (+) 351 WP_005627389.1 purine nucleoside phosphoramidase -
  K8O83_RS09395 (K8O83_09285) - 1825720..1826070 (+) 351 WP_005647993.1 YcfL family protein -
  K8O83_RS09400 (K8O83_09290) nagZ 1826074..1827126 (+) 1053 WP_006995612.1 beta-N-acetylhexosaminidase -
  K8O83_RS09405 (K8O83_09295) rlmC 1827123..1828301 (+) 1179 WP_006995611.1 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC -
  K8O83_RS09410 (K8O83_09300) crp 1828666..1829340 (-) 675 WP_005647998.1 cAMP-activated global transcriptional regulator CRP Regulator
  K8O83_RS09415 (K8O83_09305) - 1829325..1829576 (-) 252 WP_005647999.1 YheU family protein -
  K8O83_RS09420 (K8O83_09310) slmA 1829598..1830254 (-) 657 WP_005648000.1 nucleoid occlusion factor SlmA -
  K8O83_RS09425 (K8O83_09315) dut 1830261..1830713 (-) 453 WP_006995610.1 dUTP diphosphatase -
  K8O83_RS09430 (K8O83_09320) coaBC 1830761..1831963 (-) 1203 WP_006995609.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  K8O83_RS09435 (K8O83_09325) radC 1832127..1832792 (+) 666 WP_013527272.1 DNA repair protein RadC -
  K8O83_RS09440 (K8O83_09330) rpmB 1833006..1833242 (+) 237 WP_006995608.1 50S ribosomal protein L28 -
  K8O83_RS09445 (K8O83_09335) rpmG 1833254..1833424 (+) 171 WP_005613503.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25151.85 Da        Isoelectric Point: 6.8375

>NTDB_id=603132 K8O83_RS09410 WP_005647998.1 1828666..1829340(-) (crp) [Haemophilus aegyptius strain FDAARGOS_1478]
MSNELTEIDEVVTSSQEEATQRDPVLDWFLTHCHLHKYPAKSTLIHAGEDATTLYYVIKGSVMVSSKDDEGKEMILTYLG
AGQFFGEAGLFDEGSKRSAWVKTKTTCEIAEISYKKYRQLIQANPEILMFLTAQLARRLQNTSRQVTNLAFLDVAGRIAQ
TLMNLAKQPEAMTHPDGMQIKITRQEIGQMVGCSRETVGRIIKMLEDQNLIHAHGKTIVVYGAR

Nucleotide


Download         Length: 675 bp        

>NTDB_id=603132 K8O83_RS09410 WP_005647998.1 1828666..1829340(-) (crp) [Haemophilus aegyptius strain FDAARGOS_1478]
ATGTCAAATGAATTAACCGAAATTGATGAAGTTGTAACCTCCTCTCAAGAAGAGGCAACTCAACGAGATCCCGTTTTAGA
TTGGTTTCTTACTCACTGCCATTTGCATAAATATCCTGCAAAATCAACTTTAATTCATGCTGGGGAAGATGCGACCACGC
TGTATTATGTAATTAAAGGTTCTGTAATGGTATCTTCAAAAGATGATGAAGGCAAAGAGATGATCCTCACTTACTTAGGT
GCAGGACAATTTTTTGGCGAAGCGGGATTATTTGATGAAGGTTCAAAACGATCAGCTTGGGTAAAAACAAAAACAACATG
TGAAATTGCTGAAATTTCCTATAAGAAATATCGCCAGTTGATTCAGGCAAACCCTGAAATCTTAATGTTTCTCACTGCAC
AATTGGCAAGACGTTTGCAAAATACATCACGTCAAGTCACGAATTTGGCATTTTTAGACGTCGCAGGTCGCATCGCTCAA
ACTTTAATGAACTTAGCTAAACAGCCTGAAGCAATGACGCATCCTGATGGTATGCAAATCAAAATTACACGCCAAGAAAT
AGGGCAAATGGTGGGGTGTTCACGAGAAACTGTGGGGCGCATTATTAAGATGTTGGAGGATCAGAATCTTATCCACGCTC
ATGGAAAAACAATCGTTGTATATGGCGCAAGATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(36-124)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(156-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QLV0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Haemophilus influenzae Rd KW20

100

100

1
  crp Vibrio cholerae strain A1552

75.49

91.071

0.687
  crp Acinetobacter baumannii D1279779

48.705

86.161

0.42