Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   K8O83_RS02515 Genome accession   NZ_CP082857
Coordinates   454438..454959 (+) Length   173 a.a.
NCBI ID   WP_005662592.1    Uniprot ID   -
Organism   Haemophilus aegyptius strain FDAARGOS_1478     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 449438..459959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O83_RS02495 (K8O83_02450) - 449520..450365 (-) 846 WP_006995138.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  K8O83_RS02500 (K8O83_02455) - 450438..453038 (-) 2601 WP_006995137.1 penicillin-binding protein 1A -
  K8O83_RS02505 (K8O83_02460) - 453137..453934 (+) 798 Protein_466 competence protein ComA -
  K8O83_RS02510 (K8O83_02465) comB 453935..454441 (+) 507 WP_006995134.1 competence protein ComB Machinery gene
  K8O83_RS02515 (K8O83_02470) comC 454438..454959 (+) 522 WP_005662592.1 competence protein ComC Machinery gene
  K8O83_RS02520 (K8O83_02475) comD 454956..455369 (+) 414 WP_006995133.1 pilus assembly protein PilP Machinery gene
  K8O83_RS02525 (K8O83_02480) comE 455379..456716 (+) 1338 WP_006995132.1 type IV pilus secretin PilQ Machinery gene
  K8O83_RS02530 (K8O83_02485) - 456729..457415 (+) 687 WP_006995131.1 ComF family protein -
  K8O83_RS02535 (K8O83_02490) nfuA 457491..458087 (+) 597 WP_006995130.1 Fe-S biogenesis protein NfuA -
  K8O83_RS02540 (K8O83_02495) nudC 458154..458949 (+) 796 Protein_473 NAD(+) diphosphatase -
  K8O83_RS02545 (K8O83_02500) - 458985..459575 (+) 591 WP_006995127.1 YjaG family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19961.15 Da        Isoelectric Point: 10.1286

>NTDB_id=603113 K8O83_RS02515 WP_005662592.1 454438..454959(+) (comC) [Haemophilus aegyptius strain FDAARGOS_1478]
MKAFFNDPLTPFGKWLSQPFYVHGLTFLLLLSAVIFRPVLDYIEGSSRFHEIENELAVKRSELLHQQKILTSLQQQSESR
KLSPELAAQIIPLNKQIQRLAARNGLSQHLRWEMGQKPILHLQLTGHFEKTKTFLTALLANSSQLSVSRLQFIKPEDSPL
QTEIIFQLDRETK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=603113 K8O83_RS02515 WP_005662592.1 454438..454959(+) (comC) [Haemophilus aegyptius strain FDAARGOS_1478]
ATGAAAGCTTTTTTTAACGATCCTTTGACTCCTTTTGGAAAATGGCTAAGTCAGCCTTTTTATGTGCACGGTTTAACCTT
TTTATTGCTATTAAGTGCGGTGATTTTTCGCCCCGTTTTAGATTATATCGAGGGGAGTTCACGTTTCCATGAAATTGAAA
ATGAGTTAGCGGTGAAACGTTCAGAATTGTTGCATCAACAGAAAATTTTAACTTCTTTACAGCAGCAATCGGAAAGTCGA
AAACTTTCTCCAGAACTGGCTGCACAAATTATTCCTTTGAATAAACAAATTCAACGTTTAGCTGCACGCAACGGTTTATC
TCAGCATTTACGTTGGGAAATGGGGCAAAAGCCTATTTTGCATTTACAGCTTACAGGTCATTTTGAGAAAACGAAGACAT
TTTTAACCGCACTTTTGGCTAATTCGTCACAGCTTTCAGTGAGTCGCTTGCAGTTTATCAAACCCGAAGACAGCCCATTG
CAAACCGAGATTATTTTTCAGTTAGATAGGGAGACAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Haemophilus influenzae 86-028NP

98.266

100

0.983
  comC Haemophilus influenzae Rd KW20

97.11

100

0.971