Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   K8O83_RS02510 Genome accession   NZ_CP082857
Coordinates   453935..454441 (+) Length   168 a.a.
NCBI ID   WP_006995134.1    Uniprot ID   A0AAV2U2E4
Organism   Haemophilus aegyptius strain FDAARGOS_1478     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448935..459441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O83_RS02490 (K8O83_02445) - 449038..449367 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  K8O83_RS02495 (K8O83_02450) - 449520..450365 (-) 846 WP_006995138.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  K8O83_RS02500 (K8O83_02455) - 450438..453038 (-) 2601 WP_006995137.1 penicillin-binding protein 1A -
  K8O83_RS02505 (K8O83_02460) - 453137..453934 (+) 798 Protein_466 competence protein ComA -
  K8O83_RS02510 (K8O83_02465) comB 453935..454441 (+) 507 WP_006995134.1 competence protein ComB Machinery gene
  K8O83_RS02515 (K8O83_02470) comC 454438..454959 (+) 522 WP_005662592.1 competence protein ComC Machinery gene
  K8O83_RS02520 (K8O83_02475) comD 454956..455369 (+) 414 WP_006995133.1 pilus assembly protein PilP Machinery gene
  K8O83_RS02525 (K8O83_02480) comE 455379..456716 (+) 1338 WP_006995132.1 type IV pilus secretin PilQ Machinery gene
  K8O83_RS02530 (K8O83_02485) - 456729..457415 (+) 687 WP_006995131.1 ComF family protein -
  K8O83_RS02535 (K8O83_02490) nfuA 457491..458087 (+) 597 WP_006995130.1 Fe-S biogenesis protein NfuA -
  K8O83_RS02540 (K8O83_02495) nudC 458154..458949 (+) 796 Protein_473 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19737.61 Da        Isoelectric Point: 8.5473

>NTDB_id=603112 K8O83_RS02510 WP_006995134.1 453935..454441(+) (comB) [Haemophilus aegyptius strain FDAARGOS_1478]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKNTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK

Nucleotide


Download         Length: 507 bp        

>NTDB_id=603112 K8O83_RS02510 WP_006995134.1 453935..454441(+) (comB) [Haemophilus aegyptius strain FDAARGOS_1478]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAAATACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCGAATAACTTAAGCTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

98.81

100

0.988
  comB Haemophilus influenzae Rd KW20

98.81

100

0.988