Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   K8O89_RS12785 Genome accession   NZ_CP082852
Coordinates   2837177..2838250 (+) Length   357 a.a.
NCBI ID   WP_019234827.1    Uniprot ID   A0AAX0WZB0
Organism   Legionella anisa strain FDAARGOS_1480     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2832177..2843250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O89_RS12760 (K8O89_12750) - 2832284..2833036 (-) 753 WP_019234822.1 CPBP family glutamic-type intramembrane protease -
  K8O89_RS12765 (K8O89_12755) rsmB 2833084..2834388 (-) 1305 WP_019234823.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  K8O89_RS12770 (K8O89_12760) fmt 2834385..2835329 (-) 945 WP_019234824.1 methionyl-tRNA formyltransferase -
  K8O89_RS12775 (K8O89_12765) def 2835542..2836051 (-) 510 WP_019234825.1 peptide deformylase -
  K8O89_RS12780 (K8O89_12770) - 2836143..2837180 (+) 1038 WP_019234826.1 LysM peptidoglycan-binding domain-containing protein -
  K8O89_RS12785 (K8O89_12775) dprA 2837177..2838250 (+) 1074 WP_019234827.1 DNA-processing protein DprA Machinery gene
  K8O89_RS12790 (K8O89_12780) - 2838254..2838691 (+) 438 WP_019234828.1 DUF494 family protein -
  K8O89_RS12795 (K8O89_12785) topA 2838929..2841217 (+) 2289 WP_019234829.1 type I DNA topoisomerase -
  K8O89_RS12800 (K8O89_12790) - 2841330..2841584 (-) 255 WP_019234830.1 hypothetical protein -

Sequence


Protein


Download         Length: 357 a.a.        Molecular weight: 38665.43 Da        Isoelectric Point: 6.2282

>NTDB_id=603055 K8O89_RS12785 WP_019234827.1 2837177..2838250(+) (dprA) [Legionella anisa strain FDAARGOS_1480]
MNNLSYYLALNRMERVGPRTADKLQKRWPDLQQMFQLSAVELEQAGLSFALAQTIAGFDLSLVQEDLRWLEAADDHHILT
WDSPEYPSLLKEITDPPIVLYAKGQLSCLKQPTLAVVGSRNPTVTGSENARQFAKAIASHGVTIVSGLALGVDAQAHLGC
LEAGGQTIAVLGTGIDRIYPHQHKGLSQQIAQNGLLVSEFPLKSPPIAGHFPRRNRIISGLSLCTLVVESAIKSGSLITA
RMALEQNRDVLAIPGSIHNPLARGCHYLLQQGAKLVTSVVDVLEEFQIDSEQQTADKAILPLASGNKNLVKFIGFEMTTV
DQIILRSGCTVEQVTSELAELELNGAVVSVPGGYMRC

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=603055 K8O89_RS12785 WP_019234827.1 2837177..2838250(+) (dprA) [Legionella anisa strain FDAARGOS_1480]
ATGAATAATTTATCCTATTACCTCGCATTAAACCGAATGGAAAGAGTGGGGCCGCGTACTGCTGACAAACTACAAAAACG
TTGGCCTGATTTACAACAAATGTTCCAGCTTTCAGCAGTTGAACTGGAACAAGCGGGTCTATCCTTTGCTTTGGCACAAA
CGATAGCTGGTTTTGATTTGAGCTTGGTGCAAGAAGATCTCAGATGGTTGGAGGCTGCAGACGATCATCATATACTCACT
TGGGATTCGCCCGAGTATCCCTCTTTATTGAAAGAAATTACGGATCCTCCTATCGTTTTATATGCAAAAGGGCAGCTTTC
CTGTTTAAAGCAACCTACATTAGCTGTAGTAGGTAGTCGTAACCCTACTGTAACTGGGAGTGAAAATGCACGGCAATTTG
CAAAAGCAATCGCATCCCACGGCGTGACGATTGTAAGTGGTTTGGCACTAGGTGTTGACGCCCAGGCTCATCTGGGATGT
TTGGAGGCAGGAGGACAAACAATTGCGGTTTTAGGCACGGGAATCGATCGAATATATCCTCATCAGCACAAGGGTTTGTC
GCAACAAATTGCTCAGAATGGCTTGTTAGTGAGCGAATTTCCCTTAAAAAGTCCACCTATCGCTGGACATTTCCCTAGAA
GAAATCGTATAATAAGTGGTTTATCATTGTGCACTTTGGTTGTTGAGTCAGCAATCAAAAGTGGTTCGTTAATCACAGCA
CGAATGGCCTTGGAACAAAACCGAGATGTTTTAGCAATCCCTGGCTCCATTCACAATCCTCTGGCTCGAGGGTGTCATTA
CCTGTTACAGCAAGGAGCCAAATTAGTTACTTCAGTTGTTGATGTTCTCGAGGAGTTTCAGATTGATTCAGAACAACAAA
CAGCTGATAAAGCTATTTTACCTCTTGCCAGCGGGAATAAAAACCTAGTAAAGTTCATTGGCTTTGAAATGACAACTGTT
GATCAGATCATTTTACGTAGTGGATGCACCGTTGAGCAAGTCACTAGTGAGCTTGCAGAATTAGAATTAAATGGGGCTGT
AGTATCTGTGCCCGGTGGCTATATGAGGTGTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Legionella pneumophila strain ERS1305867

73.95

100

0.74

  dprA Vibrio campbellii strain DS40M4

44.932

100

0.459

  dprA Vibrio cholerae strain A1552

42.818

100

0.443

  dprA Glaesserella parasuis strain SC1401

38.933

100

0.409