Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   K6959_RS15005 Genome accession   NZ_CP082780
Coordinates   3094775..3095146 (-) Length   123 a.a.
NCBI ID   WP_163241040.1    Uniprot ID   -
Organism   Bacillus aquiflavi strain 3H-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3089775..3100146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6959_RS14990 (K6959_14990) - 3089842..3091530 (+) 1689 WP_163241044.1 SWIM zinc finger domain-containing protein -
  K6959_RS14995 (K6959_14995) - 3091514..3094363 (+) 2850 WP_163241042.1 DEAD/DEAH box helicase -
  K6959_RS15000 (K6959_15000) - 3094573..3094782 (-) 210 WP_163240891.1 hypothetical protein -
  K6959_RS15005 (K6959_15005) ssbB 3094775..3095146 (-) 372 WP_163241040.1 single-stranded DNA-binding protein Machinery gene
  K6959_RS15010 (K6959_15010) - 3095497..3095934 (+) 438 WP_163241038.1 YwpF-like family protein -
  K6959_RS15015 (K6959_15015) - 3096032..3096355 (-) 324 WP_163241036.1 hypothetical protein -
  K6959_RS15020 (K6959_15020) fabZ 3096622..3097056 (-) 435 WP_223086906.1 3-hydroxyacyl-ACP dehydratase FabZ -
  K6959_RS15025 (K6959_15025) - 3097240..3097566 (-) 327 WP_163241032.1 DNA-directed RNA polymerase subunit beta -
  K6959_RS15030 (K6959_15030) - 3097922..3098923 (-) 1002 WP_163241030.1 rod shape-determining protein -
  K6959_RS15035 (K6959_15035) spoIIID 3099106..3099378 (-) 273 WP_163241028.1 sporulation transcriptional regulator SpoIIID -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 14126.09 Da        Isoelectric Point: 7.1349

>NTDB_id=602158 K6959_RS15005 WP_163241040.1 3094775..3095146(-) (ssbB) [Bacillus aquiflavi strain 3H-10]
MINQVTIVGRLTRDPELKFTAEGIPVTNVTVALDRHYRNQYGEIDTDFVLCTLWKRIAENTAQYCRKGSIVGITGRIQTR
NYENDEGIKVYVTEVVAESVKFMGRKKTEEEMNKEKQEVHTIG

Nucleotide


Download         Length: 372 bp        

>NTDB_id=602158 K6959_RS15005 WP_163241040.1 3094775..3095146(-) (ssbB) [Bacillus aquiflavi strain 3H-10]
ATGATTAATCAAGTTACGATTGTTGGGAGGCTGACTCGCGATCCTGAATTGAAGTTCACCGCAGAAGGAATTCCTGTAAC
AAATGTGACGGTTGCGTTGGATCGTCATTATCGGAATCAGTATGGAGAGATTGATACAGATTTCGTACTGTGTACATTAT
GGAAACGGATTGCTGAGAATACAGCGCAATACTGCCGAAAAGGTTCCATTGTTGGGATAACCGGCAGAATCCAAACTAGA
AATTATGAAAATGATGAGGGCATTAAAGTTTATGTAACTGAAGTCGTTGCCGAATCAGTAAAATTTATGGGAAGGAAAAA
GACTGAAGAAGAAATGAATAAAGAAAAACAGGAGGTGCACACAATTGGTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.637

91.87

0.52
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.398

83.74

0.447
  ssb Latilactobacillus sakei subsp. sakei 23K

45.946

90.244

0.415